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16 protocols using ab23914

1

Histological Examination of Brain Tissue

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Deparaffinization through a series of xylene incubations followed by ethanol gradients in a standard procedure was executed prior to H&E staining (Sigma Aldrich, St. Louis, MO, USA). H&E slides were assessed qualitatively by a board-certified clinical neuropathologist (S.N.) blinded to group assignments through wide-field microscopy [56 (link)]. Immunohistochemical stains were performed with the Vectastain Kit and primary antibodies for PDGF-B (ab23914, ABCAM, San Diego, CA, USA), H-Ras (sc-29, Santa Cruz Biotechnology, Inc., Dallas, TX, USA), P53 (#2524, CST, USA), OLIG2 (P21954, Thermo Fisher Scientific, Waltham, MA, USA), glial fibrillary acidic protein (GFAP) (ab23914, ABCAM, Waltham, MA, USA), Ki67 (ab15580, ABCAM, Waltham, MA, USA), and sex determining region Y-box 2 (Sox2) (ab92494, ABCAM, Waltham, MA, USA) [57 (link)]. All slides were scanned in a raster pattern by the Neuropathology Core (Leica Aperio AT2 Slide Scanner, Leica Biosystems, Inc., Buffalo Grove, IL, USA). Images of the scans were taken with Aperio ImageScope software V12.3.3.
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2

Protein Quantification and Analysis

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Total cellular protein was extracted using RIPA buffer (Sigma-Aldrich) and quantified with BCA assay (Sigma-Aldrich). SPC25 and PDGF were measured with ELISA kits from MyBiosource and R&D Biosystem, respectively. Western blot was performed with the following antibodies: a rabbit anti-human SPC25 (1:750; Ab236972, Abcam, Dallas, TX, USA), a mouse anti-human Egr-1 (1:2,000; Ab55160, Abcam), a rabbit anti-human PDGF (1:1,000; Ab23914, Abcam), and a mouse anti-human GAPDH antibody (1:1,000; Ab8245, Abcam). All secondary antibodies were from Jackson ImmunoResearch Labs (West Grove, PA, USA). Quantification was done with ImageJ (NIH, Bethesda, MA, USA). Immunocytochemistry was done with a mouse anti-human PDGFR alpha antibody (1:50; Ab96569, Abcam).
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3

Protein Expression Analysis of PI3K/AKT and ERK Signaling

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Protein lysates were harvested using a protein extraction reagent (Kangchen, China), and then, the protein concentration was determined using a BCA Protein Assay. Equal amounts of protein were separated on 10% or 15% SDS-polyacrylamide gel electrophoresis (PAGE) gels and transferred to polyvinylidene difluoride (PVDF, Pall, USA) membranes, and then, the membranes were blocked with 5% nonfat milk for 1 h. After that, the membranes were incubated with primary antibodies against p-AKT, AKT, ERK, p-ERK (dilution rate: 1 : 1000; all antibodies related to PI3K/AKT signaling or Erk1/2 signaling were bought from Cell Signaling Technology, Inc.), PDGF-BB (1 : 1000; Abcam, ab23914), Col-I (1 : 1000; Abcam, ab34710), OPN (1 : 1000; Abcam, ab8448), OCN (1 : 500; Abcam, ab93876), PPARγ2 (1 : 500; Abcam, ab209350), and β-actin (1 : 3000; Sigma). Then, the membranes were incubated with HRP-conjugated secondary antibodies (Sigma). Finally, the immunoblots were visualized using ECL Plus reagents (Amersham Pharmacia Biotech, USA) [23 (link)].
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4

Preosteoclast-Derived PDGF-BB Effects

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Different types of conditioned media were prepared and collected, which were stored at -80°C after a centrifugation at 2500 rpm for 15 min at 4°C. Conditioned media were collected every 24h during osteoclast formation and then tested by Enzyme-linked immunosorbent assay (ELISA, R&D Systems Inc., USA) to confirm that preosteoclasts release PDGF-BB. Conditioned medium from preosteoclasts (PO-CM) with serum were collected for co-culturing with EPCs and MSCs. Serum-free PO-CM were collected for migration experiments. After the preosteoclasts being treated by different concentrations of ZOL for two days and washed by PBS twice, the ZOL-free conditioned medium from preosteoclasts (PZ-CM) were collected and tested by ELISA for PDGF-BB, as well. Besides, conditioned medium from preosteoclasts added with the neutralizing antibodies for PDGF-BB (ab23914, polyclonal, Abcam, 1 μg/ml, USA) for two hours before collection (PA-CM). The PA-CM were collected for negative control to make sure the intermediary function of PDGF-BB and conditioned media from macrophages/OPCs (M-CM) were also obtained as negative control in parallel and applying the same protocol, respectively.
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5

Immunohistochemical Analysis of Inflammatory Markers

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After de-paraffinization and rehydration of the tissue sections, they were boiled for 10 min in 0.1 M citrate buffer (pH 6.0). Next, sections were placed for 2 h in 5% bovine serum albumin (BSA) in Tris-buffered saline (TBS) and incubated at 4 °C with the primary antibodies anti-anti-IL-6, TNF-α, IL-10 anti-TGF-β1, anti-VEGF-A, anti-PDGF-B, collagen IV and CD31 overnight (Cat. No. ab9324, ab220210, ab33471, ab215715, ab1316, ab23914, ab6586 and ab182981, respectively, ABCAM, Cambridge, UK), all at 1 μg/mL. Anti-mouse or anti-rabbit HRP-DAB cell and tissue staining kits (Cat. No. CTS002 and CTS005, R&D Systems, Minneapolis, MN, USA) were used. After mounting, photographs of the slides were taken using a light microscope with a digital camera (Nikon SMZ 1000 and Nikon DS-Fi1, Tokyo, Japan). ImageJ software was used for image analysis (1.52a, NIH, Rockville, MD, USA). At least 3 sections per rat were included.
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6

Immunofluorescence Imaging of Femoral Arteries

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Cross-sections were obtained from paraffin-embedded femoral arteries and then incubated with anti-F4/80 antibody (Abcam Japan, Chuo, Tokyo, Japan; Ab204467; RRID: AB_2810932; raised in rat; 1: 50) and anti-PDGF-B antibody (Abcam Japan, Ab23914; RRID: AB_2162180, raised in rabbit, 1:50) overnight. The antibodies were diluted with Antibody Diluent (S3022; Dako, Santa Clara, CA, USA). Nuclei were stained with 4′,6-diamidino-2-phenylindole (D1306; Thermo Fisher Scientific, Waltham, MA USA). The immunofluorescence images were obtained by a confocal microscope (BZ-X710 microscope; Keyence, Osaka, Osaka, Japan).
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7

Western Blot Characterization of Extracellular Vesicles

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Exosomes or cell pellets were lysed in Cell Lysis Buffer (Cell Signaling) with protease and phosphatase inhibitor cocktail (Millipore). All lysates were cleared by centrifugation, and quantified by bicinchoninic acid (BCA) protein assay (ThermoFisher). 5 µg of protein from each sample were electrophoresed on 4–12% Bis-Tris Protein gels, and transferred to nitrocellulose membranes (ThermoFisher). Blots were probed with primary antibodies: anti-Angiopoietin-2 (2948, Cell Signaling), anti-WISP1 (ab178547, Abcam), anti-PDGF BB (ab23914, Abcam), anti-IL-1beta (ab200478, Abcam), anti-FN (1574-1, Epitomics), anti-KLF4 (HPA002926, Sigma), anti-GFP (ab6673, Abcam), anti-β-actin (8457s, Cell Signaling), anti-CD81 (Eat2 Thermo Scientific), anti-CD63 (ab193349, Abcam), anti-mouse CD9 (ab82390, Abcam), anti-human CD9 (ab92726, Abcam) , anti-Flotillin (18634, Cell Signaling), anti-Alix (2171, Cell Signaling), anti-Annexin V (8555, Cell Signaling), LAMP2 (ab203224, Abcam), anti-HSP70 (4876, Cell Signaling), anti-EpCAM (2626, Cell Signaling), and anti-GM130 (12480, Cell Signaling), then probed with the secondary antibody anti-rabbit IgG-HRP (7074s, Cell Signaling), or anti-mouse IgG-HRP (7076, Cell Signaling), or anti-Armenian hamster (PA1-32045, Thermo Scientific). HRP-based detection was performed using SuperSignal West Substrate (Thermo Scientific).
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8

Measuring Growth Factors in Tissue

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The FLX, WGO, alpha-Cyclodextrin (α-CD), and ELISA kit for hydroxyproline were supplied by R&D Systems, Inc. a Bio-Techne Brand (Minneapolis, MN, USA). Antibodies for TNF-α ((TNFA/1172); ab220210), vascular endothelial growth factor A (VEGF-A) (ab231260), PDGF-B (ab23914), and TGF-β1 ((EPR21143); ab215715) were purchased from Abcam (Cambridge, UK). When not otherwise specified, all other chemicals of the highest commercially analytical grade were supplied by Sigma-Aldrich (St. Louis, MO, USA) or Thermo Fisher Scientific Inc. (Pittsburgh, PA, USA).
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9

Multiplex Immunohistochemistry of Tumor Markers

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Paraffin embedded sections were also stained with primary antibodies for PDGFB (ab23914, ABCAM, USA), HRAS (sc-29, SANTA CRUZ, USA), p53 (#2524, Cell Signaling Technology, USA), Ki67 (ab15580, ABCAM, USA), NQO1 (#3187, Cell Signaling Technology, USA), 4-HNE (MA5-27,570, Invitrogen, USA), Desmin (MA106401, Invitrogen, USA), CD31 (MCA1746GA, Invitrogen, USA), Collagen IV (ab6586, ABCAM, USA) with Opal Detection Kit (AKOYA BIOSCIENCES, USA) and the images were taken by Vectra Polaris Multispectral Imaging System (AKOYA BIOSCIENCES, USA) [29 (link), 30 (link)].
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10

Immunohistochemical Analysis of Spinal Ligament Tissues

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Interlaminar ligamentum flavum, interspinous ligament, or supraspinal ligament tissue was obtained from AS patients and traumatic injury patients who had spinal fractures when undergoing spinal surgery as controls. The tissues were fixed in 4% paraformaldehyde for 4–6 h and then embedded in paraffin. The paraformaldehyde-fixed paraffin-embedded sections were cut into 5 μm using a Leica RM2235. Paraffin-embedded sections were first deparaffinized twice in a series of 100% xylene, rehydrated in a series of graded ethanol (100%, 100%, 95%, and 80%), and then washed briefly in distilled water and PBS, respectively. Antigen thermal repair was performed with 0.01 M citrate buffer (pH6.0) or EDTA buffer (pH9.0) at high pressure, washed in PBS, sections were treated with 3% hydrogen peroxide-methanol for 10 min and blocked with normal goat serum for 30 min. Then, the sections were incubated overnight with PDGFB (1:100, Abcam, catalog: ab23914); GRB2 (1:50, Abcam, catalog: ab32037); P-ERK (1:100, Abcam, catalog: ab278538); RUNX2 (1:50, Abcam, catalog: ab76956) antibody at 4 °C. Goat anti-rabbit IgG secondary antibody (JACKSON, catalog: 111–035-003) was incubated and DAB solution (Sigma, catalog: D8001) was used for color development. All images were obtained using an Open-field slice scanner (NanoZoomer S210).
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