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5 protocols using chamq sybr qpcr mix

1

Quantifying GmHS1pro-1 Expression in Foliage Hairy Roots

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A real-time qPCR assay was used to test the expression levels of GmHS1pro-1 in the FHRs and the empty vector FHR control. The total RNA was isolated from different FHR tissues with an RNAiso Plus reagent (TaKaRa, Beijing, China) and cDNA was synthesized using a PrimeScript™ RT reagent kit (TaKaRa, Beijing, China). Real-time qPCR was performed on a CFX Connect qPCR system (Bio-rad, San Francisco, CA, USA) according to the manufacturer’s instructions with a ChamQ SYBR qPCR mix (Vazyme, Nanjing, China). The primers for the RT-qPCR are listed in Supplementary Materials Table S2. The calculation of the relative expression level followed the Livak method [30 (link)].
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2

Profiling of Total RNA Extraction

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Total RNA was isolated from 786O-si-1 and 786O-si-Ctrl cells using the RNA extraction Kit (Aidlab, China), according to the manufacturer’s protocol. After measuring the total RNA concentration, cDNA was generated using the HiScript® Q RT SuperMix (Vazyme, China). ChamQ SYBR qPCR Mix (Vazyme, China) was used for quantitative analysis. Primers used in this study were provided in Supplementary Table S2. Repeat experimental method and analysis method are the same as above.
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3

Inflorescence RNA Extraction and qRT-PCR Analysis

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The hot phenol method was utilized to extract inflorescence RNAs [62 (link)]. The genomic DNAs were digested using DNase I (04716728001; Roche, Basel, Switzerland). Subsequently, cDNAs were synthesized using the Strand cDNA Synthesis Kit (R211; Vazyme, Nanjing, China). Semi-quantitative RT-qPCR was performed with 2 × Rapid Taq Master Mix (P222; Vazyme, Nanjing, China). Real-time quantitative PCR was performed with ChamQ SYBR® qPCR Mix (Q311; Vazyme, Nanjing, China) on a real-time PCR instrument (Roche, Basel, Switzerland). The reference gene was UBC (AT5G25760). Three biological replicates were carried out. The primers are listed in Table S1.
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4

Quantitative PCR Detection of ASFV and CSFV

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Specific primers for qPCR detection were designed and synthesized for the ASFV p72 gene (GenBank: mk333180.1) and CSFV NS5B gene (GenBank: ay775178.2) (Supplementary Table S2), with amplified target gene lengths of 80 bp and 174 bp, respectively. The qPCR reaction system is described as below: A 20 µL volume of qPCR amplification reaction consisted of 10 µL of ChamQ SYBR qPCR Mix (Vazyme Biotech Co., Ltd., China), 0.4 µL of each of the primers (10 µM), 8.2 µL of ultrapure water and 1 µL of DNA template. The qPCR programs were as follows: Pre-denaturation at 95°C for 30 s, denaturation at 95°C for 10 s, and extension at 60°C for 30 s, with a total of 40 cycles set up.
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5

Quantitative RT-PCR Analysis of Gene Expression

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After RNA extraction, RNA quality and quantity were measured using a NanoDropTM2000 (Thermo Fisher Scientific, Inc., Waltham, MA, USA). The HiScript RT Kit (R222, Vazyme, Nanjing, China) was used to reverse the total RNA into cDNA. qRT-PCR was performed on a Step-One-Plus Real-time PCR system (Applied Biosystems; Thermo Fisher Scientific., Waltham, MA, USA) using ChamQ SYBR qPCR Mix (Q711, Vazyme, Nanjing, China). The PCR primers are shown in Supplementary Table S2, and qRT-PCR was performed as described previously [14 (link)]. Each assay was performed more than 3 times. The expression level was calculated with the 2−ΔΔCt method and normalized to the Actb expression level, defined as 1.0.
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