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24 protocols using violet red bile agar

1

Microbiological Analysis of Hake Fillets

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Hake muscle samples (10 g) were taken aseptically from chilled fillets and homogenised with 90 mL of 0.1% peptone water (Merck, Darmstadt, Germany) in sterile stomacher bags (AES, Combourg, France) as previously described [14 ,15 (link)]. Aerobes were investigated on plate count agar (PCA, Oxoid Ltd., London, UK), incubation being carried out for 48 h at 30 °C. Psychrotrophic bacteria were counted in PCA, after an incubation period of 7 days at 7–8 °C. Enterobacteriaceae were investigated in Violet Red Bile Agar (VRBA) (Merck, Darmstadt, Germany) after incubation at 37 ± 0.5 °C for 24 h. Microorganisms able to produce proteolytic or lipolytic extracellular enzymes were determined in casein agar or tributyrin agar, respectively, incubation being carried out for 48 h at 30 °C, as previously reported [49 (link)]. The limits of detection of the microbial methods were 10 CFU·g−1 in the case of aerobes, psychrotrophs, and Enterobacteriaceae, and 100 CFU·g−1 for both lipolytic and proteolytic bacteria.
For all microbiological analyses, bacterial numbers were converted into log CFU·g−1 muscle before performing the statistical analysis. All analyses were conducted in triplicate.
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2

Microbial Analysis of Fish Muscle

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These were performed in samples of 10 g which were dissected from fish muscle and were mixed with 90 mL of 0.1% peptone water (Merck, Darmstadt, Germany). The mixtures were homogenized in sterilized stomacher bags (AES, Combourg, France) as previously reported [30 (link),31 (link)]. All extracts were diluted in 0.1% peptone water.
Aerobic mesophiles were investigated in plate count agar (PCA) (Oxoid) after incubation for 48 h at 30 °C. Psychrotrophs were also investigated in PCA after 7 days of incubation at 7 °C. The investigation of Enterobacteriaceae was carried out in Violet Red Bile Agar (VRBA) (Merck) after 24 h of incubation at 37 °C. Bacteria exhibiting either a lipolytic or proteolytic phenotype were investigated in tributyrin agar or casein agar, respectively, after 48 h of incubation at 30 °C, as previously reported [32 (link)]. All microbial analyses were performed in triplicate.
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3

Microbiological Analysis of Çökelek Cheese

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Weighted as 10 g from Çökelek cheese samples were placed into 90 mL sterile sodium chloride (NaCl) solutions (0.85% w/v). Then, other dilutions were prepared as decimals. Lactobacillus bacteria counts were determined using De Man, Rogosa, Sharpe Agar (MRS agar; Merck, Darmstadt, Germany). The medium was incubated at 30 °C for 72 h, anaerobically [23] (link). M17 agar (modi ed Rogosa; Merck, Darmstadt, Germany) was incubated at 37 °C for 3 d in aerobic conditions for the determination of Streptococcus bacteria count [24] (link). Total aerobic mesophilic bacteria (TAMB) number was determined in Plate Count Agar (PCA; Merck, Darmstadt, Germany) after incubating at 30 °C for 72 h [25] . Coliform bacteria colonies were counted on the Violet Red Bile Agar (VRBA; Merck, Darmstadt, Germany) after incubated at 37 °C for 48 h [26] . Potato Dextrose Agar (PDA; Merck, Darmstadt, Germany) was used to count yeast and mold colonies. For this, PDA was incubated at 25 °C for 5 d [27] .
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4

Hygienic Quality of Kargı Tulum Cheese

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In this study, 3 different tulum cheeses of 1 kg, filled in tulums obtained from sheep skin were used. In order to determine the hygienic quality of Kargı Tulum cheese, total mesophilic aerobic bacteria (TMAB), yeast and mold and coliform group bacteria counts. 10 grams of samples brought to the laboratory were weighed under aseptic conditions and put into sterile bags. 90 ml sterile 0.1% peptone water was added, homogenized, dilutions were prepared with peptone water successive dilutions and the spread plate method was used. TMAB counts were determined on Plate Count Agar (PCA, Merck) plates incubated at 30°C for 24-48 hours; yeast and moulds counts was determined on Patato Dextrose Agar (PDA, Merck) plates incubated at 25°C for 5 days. The number of coliform group bacteria was determined on Violet Red Bile Agar (VRBA, Merck) and after 24 hours of incubation at 37°C (Halkman, 2005) . The results were expressed as log of colony forming units (cfu) per gram of cheese. Microbial enumeration experiments were conducted in triplicates.
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5

Microbial Analysis of Fish Muscle

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Portions of 10 g of fish muscle were dissected aseptically from refrigerated fish, mixed with 90 mL of 0.1 % peptone water (Merck, Darmstadt, Germany) and homogenised in sterilised stomacher bags (AES, Combourg, France) as previously described (Ben-Gigirey et al. 1998; Ben-Gigirey et al. 1999) . Serial dilutions from the microbial extracts were prepared in 0.1 % peptone water in all the cases.
Total aerobes were determined on plate count agar (PCA) (Oxoid Ltd., London, UK) after incubation at 30 ºC for 48 h. Psychrotrophs were determined in PCA, after incubation at 7-8 ºC for 7 days. Enterobacteriaceae members of the coliforms group were investigated in Violet Red Bile Agar (VRBA) (Merck, Darmstadt, Germany) after incubation at 37±0.5 ºC for 24 h. Microorganisms exhibiting proteolytic or lipolytic phenotypes were investigated in casein-agar or tributyrine-agar, respectively, after incubation at 30ºC for 48 h, as previously reported (Ben-Gigirey et al. 2000) .
In all the cases, bacterial counts were transformed into log CFU g -1 muscle before undergoing statistical analysis. All analyses were conducted in triplicate.
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6

Microbial Assessment of Fish Muscle

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Portions of 10 g of fish white muscle were dissected aseptically from refrigerated fish specimens, mixed with 90 mL of 0.1% peptone water (Merck, Darmstadt, Germany) and homogenized in sterilized stomacher bags (AES, Combourg, France) as described elsewhere (Ben-Gigirey, Vieites Baptista de Sousa, Villa, & Barros-Velázquez, 1998; Ben-Gigirey, Vieites Baptista de Sousa, Villa, & Barros-Velázquez, 1999) . Serial dilutions from the microbial extracts were prepared in 0.1% peptone water.
Total aerobes were assessed by surface inoculation on plate count agar (PCA, Oxoid Ltd., London, UK) after incubation at 30ºC for 48 h. Psychrotrophs were also determined in PCA, after an incubation period of 7 days at 7-8ºC. Enterobacteriaceae were investigated by pour plating using Violet Red Bile Agar (VRBA) (Merck, Darmstadt, Germany) after an incubation period of 24 h at 37±0.5ºC. Bacteria exhibiting proteolytic or lipolytic phenotypes were determined on casein-agar or tributyrine-agar, respectively, after incubation at 30ºC for 48 h, as described elsewhere (Ben-Gigirey, Vieites Baptista de Sousa, Villa, & Barros-Velázquez, 2000) .
In all cases, microbial counts were transformed into log CFU g -1 muscle before undergoing statistical analysis. All analyses were conducted in triplicate.
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7

Enumeration of Microbial Populations in Fish Muscle

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Aliquots of fish muscle (10 g) were sampled aseptically, mixed with 90 mL of 0.1 % peptone water (Merck, Darmstadt, Germany) in sterile bags (Seward, London, UK) and homogenised in a masticator (AES, Combourg, France), as previously reported. 23, 24 Serial dilutions (10 -1 to 10 -8 ) of these extracts were also prepared in 0.1 % peptone water.
Total aerobes and psychrotrophs were enumerated on plate count agar (PCA) (Oxoid Ltd., London, UK) after incubation at 30 ºC, for 48 h and 7-8 ºC for 7 days, respectively. In both cases, all colonies were considered to be target bacteria.
Enterobacteriaceae were enumerated by the pour plate method in violet red bile agar (VRBA) (Merck, Darmstadt, Germany), after incubation at 37 ± 0.5 ºC, for 24 h. Only red colonies were counted. In all cases, culture media were prepared according to the manufacturer's instructions. Bacteria exhibiting a proteolytic phenotype were enumerated on casein agar after incubation at 30 ºC, for 48 h, as previously described. 25 Only white or yellow colonies, exhibiting a decolorized halo were counted.
Microbial counts were transformed into log CFU g -1 muscle, prior to statistical analysis. All analyses were carried out in triplicate.
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8

Microbial Analysis of Horse Mackerel

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Horse mackerel samples of 10 g of white muscle were taken aseptically, mixed with 90 mL of 0.1 % peptone water (Merck, Darmstadt, Germany) and further homogenised in sterilised stomacher bags (AES, Combourg, France) according to previous research [28] [29] . A 0.1 % peptone-water solution was employed to prepare serial dilutions from the different microbial extracts.
Total aerobes were investigated on plate count agar (PCA, Oxoid Ltd., London, UK) after incubation at 30 ºC for 48 h. Psychrotrophes were also investigated in PCA, being the incubation carried out at 7-8 ºC for 7 days. Enterobacteriaceae were analysed by pour plating using Violet Red Bile Agar (VRBA) (Merck, Darmstadt, Germany) after incubation for 24 h at 37 ± 0.5 ºC. Microorganisms showing a proteolytic or lipolytic phenotype were analysed on casein-agar medium and tributyrine-agar, respectively, after incubation at 30 ºC for 48 h, according to previous research [30] .
For all kinds of analyses, microbial counts were transformed into log CFU g -1 muscle values before undergoing the statistical analysis. All analyses were carried out in triplicate.
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9

Microbiological Analysis of Fish Muscle

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Samples of 10 g of fish muscle were dissected aseptically from refrigerated fish specimens, mixed with 90 mL of 0.1% peptone water (Merck, Darmstadt, Germany) and homogenised in sterilised stomacher bags (AES, Combourg, France) as previously described (Ben-Gigirey et al., 1998; Ben-Gigirey et al., 1999) . In all of the cases, serial dilutions from the microbial extracts were prepared in 0.1% peptone water.
Total aerobes were investigated by surface inoculation on plate count agar (PCA, Oxoid Ltd., London, UK) after incubation at 30ºC for 48 h. The anaerobe counts were also determined in PCA at 30±0.5ºC, except that an anaerobic atmosphere kit (Oxoid Ltd.) was placed together with the plates inside the anaerobiosis jar.
Psychrotrophs were also investigated in PCA, being the incubation carried out at 7-8ºC for 7 days. Enterobacteriaceae were investigated via pour plating using Violet Red Bile Agar (VRBA) (Merck, Darmstadt, Germany) after incubation at 37±0.5ºC for 24 h. In all of the cases, bacterial counts were transformed into log CFU g -1 muscle before undergoing statistical analysis. All of the analyses were conducted in triplicate.
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10

Microbiological Analysis of Lobster Krill Muscle

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Muscle samples (10 g) were dissected aseptically from chilled lobster krill specimens, mixed with 90 ml of 0.1 % peptone water (Merck, Darmstadt, Germany), and homogenised in sterilized stomacher bags (AES, Combourg, France) as previously described (Ben-Gigirey et al., 1998 , 1999) . In all cases, serial dilutions of the microbial extracts were prepared in 0.1 % peptone water.
Total aerobes were determined by surface inoculation on plate count agar (PCA, Oxoid Ltd., London, UK), after incubation at 30ºC for 48 h. The anaerobe counts were also determined on PCA at 30ºC, except that an anaerobic atmosphere kit (Oxoid) was placed together with the plates inside an anaerobic jar. Psychrotrophes were also determined on PCA but incubation was carried out at 7-8ºC for 7 d. Enterobacteriaceae were determined by pour plating using Violet Red Bile Agar (VRBA) (Merck, Darmstadt, Germany) after incubation at 37ºC for 24 h. Microorganisms exhibiting a proteolytic or lipolytic phenotype were determined on casein-agar medium or tributyrine-agar, respectively, after incubation at 30ºC for 48 h, as previously described (Ben-Gigirey et al., 2000) .
In all cases, bacterial counts were transformed into log CFU g -1 muscle before undergoing statistical analysis. All microbiological analyses were done in triplicate.
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