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16 protocols using trypsin

1

Phytochemical Characterization of Celery

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Apium graveolens L. was acquired from the local market. MTT, DPPH, and ABTS were obtained from Sigma-Aldrich (St. Louis, MO, USA). BSA, DMEM, RPMI 1640 medium, HBBS, trypsin, and PBS were procured from Biosera (Manila, Philippines). DMSO, Folin-Ciocalteu reagent,
sodium carbonate, nutrient broth, hexane, and methanol were acquired from Merck & Co. Inc., Darmstadt, Germany. Standard antibiotics were procured from EBEWE Pharma GmbH Nfg.KG, Mondseestraße, Austria and Invitrogen, San Diego, CA, USA.
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2

Comprehensive Cell Cytotoxicity Evaluation

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Acetic acid, dimethyl sulfoxide (DMSO), trichloroAcetic acid (TCA), sulforhodamine B (SRB) and Trizma base were purchased from Sigma-Aldrich (St. Louis, MO, USA); Annexin V-PI kit was purchased from BD Biosciences (Franklin Lakes, NJ, USA); Dulbecco’s Modified Eagle’s Medium (DMEM) and phosphate-buffered saline (PBS) were purchased from Gibco (Thermo Fisher Scientific, Waltham, MA, USA); trypsin, fetal bovine serum (FBS) and penicillin/streptomycin, were purchased from Biosera (Boussens, France). Formalin and Hematoxylin were purchased from Merck (Merck Millipore, Billerica, MA, USA) and eosin, xylole and paraffin were purchased from Diapath (Martinengo BG, Italy). DAB (3,3’-Diaminobenzidine) was purchased from Dako (Agilent Technologies, Santa Clara, CA, USA). All antibodies were purchased from Cell Signaling (Danvers, MA, USA).
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3

Cultivation of RTgill-W1 Trout Gill Cells

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The rainbow trout (Oncorhynchus mykiss) epithelial gill cell line RTgill-W1 [41] , kindly provided by Kristin Schirmer (EAWAG, Dübendorf, Switzerland), was used for the experiments. Cells were cultivated in 75 cm2 cell-culture flasks (material: polystyrol without surface modification, TPP AG, Switzerland) using L-15 medium with pen/strep containing 10% FBS. Cells were maintained at 19°C in normal atmosphere (ambient gas composition: 21% O2, 78% N2, and 0.04% CO2) with no CO2 supplementation and sub-cultured weekly. For sub-culturing and seeding in plates for cytotoxicity assessments (see below), cells were harvested by flushing with 2.5 ml versene (LuBio Science) twice followed by incubation with trypsin (BioSera, Socochim SA, Lausanne, Switzerland) for 3 min. trypsin treatment was terminated by adding 5 ml of L-15 medium containing 10% FBS. The obtained cell suspensions were centrifuged at 1,000 rpm for 5 min (Megafuge 1.0R, Heraeus), re-suspended in medium, and cells were enumerated using a Neubauer hemocytometer cell counting chamber.
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4

Cytotoxicity Assay with Cell Culture Reagents

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Dulbecco’s Modified Eagle’s Medium (DMEM), DMEM high glucose, and RPMI media were purchased from Gibco® (Gaithersburg, MD, USA). Fetal bovine serum (FBS), trypsin, penicillin/streptomycin, and phosphate buffered saline (PBS) were purchased from Biosera (Boussens, France). DMSO, acetic acid, TCA, Trizma base, and sulforhodamine B (SRB) were purchased from Sigma-Aldrich (Steinheim, Germany). Annexin V-PI kit was purchased from BD Biosciences (San Jose, CA, USA).
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5

Culturing Murine L929 Fibroblasts

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L929 cells (murine fibroblasts) were purchased from Deutsche Sammlung von Microorganismen und Zellkulturen (DSMZ – Braunschweig, Germany). Cells were cultured in Dulbeccos's Modified Eagle Medium (DMEM), high glucose, supplemented with 10% fetal bovine serum (FBS), 2 mM l-glutamine, 100U/ml penicillin and 100 μg/ml streptomycin, while incubated under humidified conditions at 37 °C and 5% CO2. L929 cells were grown as monolayer cultures, while when confluency reached 80–90%, cells were sub-cultured for a maximum of 20–25 passages, before new vials were used. Cell culture media and reagents [FBS, antiobiotics, trypsin, Phosphate Buffer Saline (PBS)] were purchased from Biosera (Kansas City, MO, USA). Resazurin sodium salt was obtained from Fluorochem (Derbyshire, UK). while cell culture plastic ware was obtained from Corning (NY, USA).
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6

Cell Culture Reagent Procurement

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All reagents were purchased from Sigma-Aldrich (St Louis, MO, USA) if not specifically stated, and were ultrapure grade. Penicillin/streptomycin was purchased from Invitrogen. FBS, PBS, RPMI 1640 and trypsin were purchased from Biosera. DXR was obtained from EBEWE Pharma. Rh123 was purchased from Sigma-Aldrich.
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7

Cytotoxicity Evaluation of Algal Extracts

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Cells were trypsinized with trypsin 0.25%, counted by trypan blue (Biosera, France) and suspended at a concentration of 3 × 104 cell/ml. 100 μl of this suspension was added to each well of a 96-well plate. Cells were left overnight to attach to the plate. After 24 h, cells were inoculated, in triplicates, with quadruple-serially diluted concentrations of the algal extracts ranged from 6.25 μg/ml to 400 μg/ml. Negative controls for each extract concentrate were normal media containing the corresponding DMSO concentration. Doxorubicin was used at double-serially diluted concentrations between 0.9 × 10−2 μg/ml to 0.58 μg/ml. After 72 h of treatment, the medium was removed, and cell viability was measured by MTT assay. Briefly, 100 μl of MTT (0.5 mg/ml) in RPMI-1640 without phenol red was added to each well in the dark, and the plates were placed in the incubator for 4 h. Next, the supernatant was removed carefully, and 150 μl of DMSO (Merck, Germany) was added to each well. Plates were shacked for 15 min and were then read at 570 nm using a microplate reader. All the experiments were repeated three times. Cell cytotoxicity of each extract was calculated using the following equation:
%cytotoxicity = 100 − (ABStest/ABScontrol × 100%).
Where ABStest is the average absorbance of cells treated with algal extracts, ABScontrol is the average absorbance of corresponding DMSO control.
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8

Doxorubicin and Nutlin-3 Induced Gene Expression

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Cells (normal fibroblast skin cell line BJ (ATCC® CRL-2522), FXN 4654 and MCF7) were harvested using trypsin (Biosera) and seeded into 6 cm tissue culture dishes (TPP). After 24 hours cells were treated with 0.1 μM doxorubicin or 1 μM Nutlin-3 for 4 hours. For RT-qPCR analysis, total RNA was isolated by applying NucleoSpin RNA II (MachereyNagel, according to the manufactures instruction) (Düren, Germany) and 2 μg of RNA were reverse transcribed using the High Capacity RT kit (Applied Biosystems, according to manufactures protocol) (Brno, Czech Republic). PCR was performed using the EvaGreen (Solis Biodyne) fluorescent dye in the standard program (15 min 95 °C; 15 s 95 °C, 30 s 60 °C, 20 s 72 °C, 10 s 74 °C; 50 cycles) running in the RotorGene 6000 (Corbett Research). PCR reactions for each sample were repeated in triplicates. The GAPDH reference gene was used as endogenous control. An absolute quantification of mRNA levels was done and relatively related to control (with no treatment). The following primer sets were used: GADPH-QF15: ACAACTTTGGTATCGTGGAAGG; GADPH-QR15: GCCATCACGCCACAGTTTC, FXN-F: CAGAGGAAACGCTGGGACTCT; FXN-R: AGCCAGATTTGCTTGTTTGG; p21-F: CCTCAAATCGTCCAGCGACCTT; p-21-R: CATTGTGGGAGGAGCTGTGAAA.
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9

Murine Fibroblast Cell Culture Protocols

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L929 murine fibroblast cells were purchased from Deutsche Sammlung von Microorganismen und Zellkulturen (DSMZ – Braunschweig, Germany). Cells were cultured in Dulbeccos’s Modified Eagle Medium (DMEM) high glucose, supplemented with 10% fetal bovine serum (FBS), 2 mM L-glutamine, 100U/ml penicillin and 100 μg/ml streptomycin, and incubated under humidified conditions at 37 °C and 5% CO2. Murine fibroblast cells were grown as monolayer cultures and were sub-cultured for a maximum of 15–20 passages, before new vials were used. DMEM high glucose culture media and reagents [Phosphate Buffer Saline (PBS), foetal bovine serum (FBS), antibiotics and trypsin] were obtained from Biosera (Kansas City, MO, USA), while for cytotoxicity assays, Resazurin sodium salt was purchased from Fluorochem (Derbyshire, UK).
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10

Cultivation and Treatment of Colorectal Cancer Cells

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HT-29 and HCT-116 human adenocarcinoma cells (ATCC®, HTB-38™) were obtained from LGC Standards (Teddington, UK). Cells were cultivated in humidified 5% CO2 at 37°C in DMEM (Sigma-Aldrich, St. Louis, Missouri, USA) with 10% fetal bovine serum (FBS) (Invitrogen, Paisley, UK), 2 mM L-glutamine, 100 U/mL penicillin and 100 U/mL streptomycin (Lonza, Basel, Switzerland). Adherent cells were harvested with trypsin (Biosera, Nuaillé, France) and counted using the Bürker chamber (Assistent, Sondheim vor der Rhön, Germany). The cells were treated with a stock solution of 5 mM perifosine (Sigma-Aldrich, St. Louis, Missouri, USA) in 50% ethanol (VWR International, Monroeville, Pennsylvania, USA).
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