The largest database of trusted experimental protocols

11 protocols using duolink in situ detection reagent kit

1

Spatial Analysis of Tight Junction Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Duolink II in situ PLA immunostaining for ZO-1 and Claudin-5 interactions was performed using the Duolink in situ detection reagent kit (Sigma-Aldrich) according to the manufacturer's protocol, as described in our recent work 49 (link). Briefly, brain sections were blocked for 1 h and incubated overnight with mouse and rabbit primary antibodies at 4 °C overnight. After 3 washes, the sections were incubated with Duolink PLA Rabbit MINUS and PLA Mouse PLUS proximity secondary probes for 1 h at 37 °C. For ligation and circularization, ligation mix was added after washing and incubated for 30 min at 37 °C. Sections were then washed, mounted on the slides, and sealed in mounting medium. PLA signals as distinct dots representing the protein-protein interactions were visualized and captured under a LSM700 confocal microscope. Dot density analyses were performed using Imaris software (Bitplane Inc.).
+ Open protocol
+ Expand
2

Protein-Protein Interaction Assay in HEK293T Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
HEK293T cells were plated on glass coverslips coated with poly-L-lysine at a density of 80,000 cells/mL. Cells were transfected 24 h later with plasmid DNA with Lipofectamine 2000 (Invitrogen). HEK cells were fixed in 4% PFA 24 h after transfection and washed three times with PBS. Following the manufacturers protocol, coverslips were blocked in Duolink blocking solution (DUO82007, Sigma) then labeled with primary antibodies and the secondary antibodies, anti-Rabbit PLUS (DUO92002, Sigma) and anti-Mouse MINUS (DUO92004, Sigma). PLA signals were detected using the red Duolink in situ detection reagent kit (DUO92008, Sigma) and imaged on the Zeiss LSM700. Images were analyzed using ImageJ software.
+ Open protocol
+ Expand
3

Interaction of CaMKIIα and NR2B in Hippocampus

Check if the same lab product or an alternative is used in the 5 most similar protocols
Interaction of CaMKIIα and NR2B in CA1 region of hippocampus was investigated by Duolink II in situ PLA immunoassay was performed as described (Sareddy et al., 2015 (link); Tu et al., 2015 (link)). Hippocampal sections taken 6 h after GCI were prepared as described above. Tissue sections were blocked in 10% donkey serum for 1 h and incubated overnight with appropriate primary antibodies at 4 °C. The slides were then incubated with Duolink PLA Rabbit MINUS and PLA Mouse PLUS proximity probes for 1 h at 37 °C. Ligation and amplification were carried out using the Duolink in situ detection reagent kit (Sigma-Aldrich) according to the manufacturer’s protocol. Images were captured under LSM510 confocal microscope and red spots representing the interactions were quantitatively analyzed using NIH ImageJ software.
+ Open protocol
+ Expand
4

Proximity Ligation Assay in HEK293 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
HEK293 cells (Invitrogen) were plated on glass coverslips coated with poly L-lysine. Cells were transfected 24 hours later with plasmid DNA with Lipofectamine 2000 (Invitrogen). HEK cells were fixed in 4% PFA 24 hours after transfection and washed 3 times with PBS. Following the manufacturers protocol, coverslips were blocked in Duolink blocking solution (Sigma-Aldrich) and labeled with primary antibodies and the secondary antibodies, anti-Rabbit PLUS (DUO92002, Sigma-Aldrich) and anti-Mouse MINUS (DUO92004, Sigma-Aldrich). PLA signals were detected using the red Duolink in situ detection reagent kit (Sigma-Aldrich) and imaged on the Zeiss LSM700. Images were analyzed using ImageJ software.
+ Open protocol
+ Expand
5

Proximity Ligation Assay for NLRP3 Interactions

Check if the same lab product or an alternative is used in the 5 most similar protocols
The proximity ligation (Duolink) assay was performed, as described by our laboratory [44 (link)]. Briefly, coronal brain sections were blocked in 5% (vol/vol) donkey serum for 1 hour at room temperature and incubated overnight with the following pairs of primary antibodies: goat-NLRP3 (Santa Cruz, sc-34,408) and rabbit-ASC (Santa Cruz, sc-22,514-R); or rabbit-NLRP3 (Santa Cruz, sc-66,846) and goat-TXNIP (Santa Cruz, sc-33,099) at 4°C. These sections were then incubated for 1 hour at 37°C with the following Duolink PLA probes: anti-Rabbit MINUS (Sigma-Aldrich, DUO92005) and anti-goat PLUS (Sigma-Aldrich, DUO92003). Duolink in situ detection reagent kit (Sigma-Aldrich, DUO92008) was used for ligation and amplification at 37°C using the according to the manufacturer's protocol. All sections were then mounted on a slide using DAPI-mounting media, and all images were captured on a confocal laser microscope (Carl Zeiss, Germany) using the Zen software at 40x magnification. Fluorescence of PLA indicating interacting proteins was analyzed as intensity above threshold using NIH ImageJ software and represented as fold change from shams.
+ Open protocol
+ Expand
6

Immunofluorescence Assay for Protein Interactions

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell samples seeded on coverslips were fixed for 10 min with 4% paraformaldehyde, washed twice with PBS, permeabilised with 0.1% Triton X-100 in PBS for 10 min and then washed twice with PBS. Thereafter, the assays were continued using the Duolink® In Situ Detection Reagent kit (DUO9207, Sigma-Aldrich) according to manufacturer’s instructions. Samples were imaged by the Nikon fluorescent microscope with NIS-Elements AR software (Nikon, Tokyo, Japan) and analysed by ImageJ/Fiji.
+ Open protocol
+ Expand
7

Duo-Link II in situ Proximity Ligation Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
The Duo-Link II in situ proximity ligation assay (PLA) was carried out with the Duolink in situ detection reagent kit (Sigma-Aldrich) according to the manufacturer’s instructions, as described in our recent studies [37 (link),32 (link)]. Briefly, coronal parallel series of sections prepared as described above were blocked in 10% donkey serum for 1 h and followed by incubation with mouse and rabbit primary antibodies overnight at 4 °C. After washing, Duolink PLA Rabbit MINUS and PLA Mouse PLUS proximity secondary probes were added to the sections and incubated for 1 h at 37°C. Sections were washed twice, ligation mix was added to the samples and Incubated for 30 min at 37°C for ligation and circularization. Amplification and detection through rolling circle amplification was conducted after washing the sections according to the manufacturer’s protocol. Sections were then mounted on the slides, sealed in mounting medium with DAPI and the PLA signals as distinct dots were visualized and captured under a LSM700 confocal microscope at 40x magnification. The red spots representing protein-protein interaction were separated and analyzed using NIH Image J software.
+ Open protocol
+ Expand
8

Proximity Ligation Assay for Protein-Protein Interactions

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells cultured in 8-well slide chamber were fixed and blocked in 5%
(vol/vol) donkey serum for 1 hour at room temperature and incubated overnight
with the respective target primary antibodies at 4°C. The cells were then
incubated for 1 hour at 37°C with the following Duolink proximity
ligation assayprobes: anti-rabbit MINUS (Sigma-Aldrich, DUO92005) and anti-mouse
PLUS (Sigma-Aldrich, DUO92003). Duolink in situ detection reagent kit
(Sigma-Aldrich, DUO92008) was used for ligation and amplification at 37°C
according to the manufacturer’s protocol. All images were acquired using
Leica WLL SP8 confocal laser scanning microscope with LASX image processing
interface.
+ Open protocol
+ Expand
9

Investigating Rho GTPase Signaling Mechanisms

Check if the same lab product or an alternative is used in the 5 most similar protocols
Anti-NM IIB (N-17), myosin light chain (MLC) (E-2), phospho-MLC (S18/T19), kalirin (C-20), intersectin (ITSN) (H-16) and GFP antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Anti-phospho-threonine, and Alexa Fluor 488 and 594–conjugated secondary antibodies were purchased from Invitrogen (Carlsbad, CA, USA). The anti-βPIX monoclonal antibody was raised against amino acids 439–648 of βPIX [17] (link). Blebbistatin (BBS) was obtained from Tocris Bioscience (Minneapolis, MN, USA). Dulbecco's Modified Eagle's Medium (DMEM), fetal bovine serum (FBS), Lipofectamine 2000, neurobasal media and stealth siRNAs for βPIX (βPIX-1: 5′- AAACUUUGCUCUUACUACCAGUUGA, βPIX-2: 5′-GGAGGAUUAUCAUCCUGAUAGACAA, βPIX-3: 5′-ACGACUGCCAUCAACAAGAGCUAUU) were purchased from Invitrogen. TRITC- and Alexa Fluor 488–conjugated phalloidin, and Duolink In Situ Detection Reagent Kit were obtained from Sigma-Aldrich (St. Louis, MO, USA). Raichu-Cdc42 and Rac1 probes for fluorescence resonance energy transfer (FRET) analysis were kindly provided by Dr. Matsuda Michiyuki (Osaka University, Osaka, Japan).
+ Open protocol
+ Expand
10

Duo-Link II PLA Immunoassay for Protein Interactions

Check if the same lab product or an alternative is used in the 5 most similar protocols
Duo-Link II in situ proximity ligation assay (PLA) immunoassay was performed as described in the recent studies (Sareddy et al., 2015 (link); Tu et al., 2015 (link)). In brief, hippocampal tissue sections were blocked in 10% donkey serum for 1 hour and incubated overnight with appropriate primary antibodies at 4 °C. The slides were then incubated with Duolink PLA Rabbit MINUS and PLA Mouse PLUS proximity probes for 1 hour at 37 °C. Ligation and amplification were carried out using the Duolink in situ detection reagent kit (Sigma–Aldrich) according to the manufacturer’s protocol. Images were captured under LSM510 confocal microscope, and red spots representing the interactions were quantitatively analyzed using NIH ImageJ software.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!