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21 protocols using histofine simple stain

1

Fluorescent Imaging and Immunohistochemistry Protocol

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We used three N1-Gal4VP16; UAS-Cre; R26GRR mice (10–13 weeks old), one UAS-Cre; R26GRR mouse (6 weeks old) and one Non-Tg mouse (5 weeks old) for the analysis. To reduce the number of mice used, we used post-weaning single mouse per group for the negative control (UAS-Cre; R26GRR and Non-Tg groups). Prior to sampling the organs, mice were sacrificed by cervical dislocation and perfused with PBS and Mildform 10 N (Cat #: 133-10311, Fujifilm, Osaka, Japan). For fluorescent imaging, 10-µm-thick frozen sections were counterstained with Hoechst 33342 (Cat #: H3570, Invitrogen, Waltham, MA, USA). For immunohistochemistry, 4-µm-thick paraffin sections were sequentially incubated with a rabbit monoclonal anti-Cre recombinase antibody (clone: D7L7L, Cat #: 15036 S, RRID: AB_2798694, Cell Signaling Technology) or a rabbit anti-RFP antibody (cat #: 600-401-379, Lot #: 46317, RRID: AB_2209751, Rockland Immunochemicals, Philadelphia, PA, USA), Histofine SimpleStain (Cat #: 414341, Nichirei Biosciences, Tokyo, Japan), Histofine DAB Substrate Kit (Cat #: 425011, Nichirei Biosciences) and counterstained with Mayer’s hematoxylin solution (Cat #: 131–09665, Fujifilm, Osaka, Japan). Images were captured by using BIOREVO-BZ-X810 (Keyence, Osaka, Japan).
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2

IHC Analysis of FFPE Biopsy Samples

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The FFPE biopsy tissue samples were sent to Jilab Inc., Tampere, Finland for immunohistochemical analysis. IHC for CD3-IELs was performed with a rabbit monoclonal anti-CD3 antibody (clone SP7, product RM-9107, Thermo Scientific, Waltham MA, dilution 1:300, incubation 1 h at room temperature). For γδ-IELs, a monoclonal antibody H-41 was used (product sc-100289, Santa-Cruz Biotechnology, Dallas TX, at dilution 1 µg/ml, incubation 1 h at room temperature). A standard IHC staining protocol using high-pH, high-temperature antigen retrieval (Tris-EDTA buffer, pH 9.0, 121C for 2 min), and a peroxidase-polymer-based detection kit (HistoFine Simple-Stain Nichirei Biosciences, Tokyo, Japan) was employed. Diaminobenzidine (DAB-2V, Nichirei) was used as chromogen (using reaction intensification with 0.5% copper sulphate) and hematoxylin for counterstaining. The staining procedure was carried out using an automated staining platform (LabVision Autostainer, ThermoFisher, Waltham, MA). An FFPE section of a known positive control (human tonsil) was included on every slide.
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3

Immunohistochemical Analysis of TLE3 in Mouse Skin

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Freshly isolated skin from C57BL/6 mice were immediately fixed in 4% paraformaldehyde in PBS and subsequently embedded in paraffin. Vertical sections, 6 to 8 μm thick, were deparaffinized in xylene and rehydrated with a graded series of ethanol concentrations. Sections were incubated at 4°C overnight with polyclonal anti-TLE3 antibody (Proteintech, Chicago, IL, USA), or normal Rabbit IgG (MBL, Aichi, Japan). After washing, sections were incubated for 1h with peroxidase-labeled secondary antibodies (Histofine Simple Stain)(Nichirei Biosciences, Tokyo, Japan). Diaminobenzidine (Histofine DAB-3S kit)(Nichirei Biosciences) served as the peroxidase substrate. ABZ-9000 (Keyence, Tokyo, Japan) microscope was used for these analyses.
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4

Immunohistochemical Analysis of 8-OHdG

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Paraffin-embedded sections of lung tissues were immunostained with an antibody against 8-OHdG (JaICA, Shizuoka, Japan) using the universal immuno-enzyme polymer method (Histofine Simple Stain; Nichirei, Tokyo, Japan). The anti-8-OHdG antibody was used at a concentration of 100 μg/ml, and nonimmune mouse IgG was used as a negative control. 3,3′-Diaminobenzidine tetrahydrochloride was used as a chromogen for color development, and Myer’s hematoxylin was used as a counterstain.
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5

Immunostaining of Paraffin-Embedded Sections

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Immunostaining of paraffin-embedded sections was performed using primary antibodies against mouse anti-β-catenin (clone 14/Beta-catenin, 610514, BD Biosciences) and rabbit anti-GFP (clone D5.1, 2956, Cell Signaling) diluted 1:100. Slides were then incubated with goat anti-mouse or anti-rabbit Histofine simple stain immuno-enzyme polymers (MAX-PO (M), 414322, and MAX-PO (R), 414341, respectively, Nichirei Bioscience Inc.), and staining was developed using metal-enhanced 3,3′-diaminobenzidine (DAB). Slides were counterstained with hematoxylin and observed under an OLYMPUS BX41 microscope (Olympus Corporation).
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6

Intestinal Cell Proliferation Assay

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Immunohistochemical staining was performed using monoclonal anti‐mouse PCNA antibodies (1:100; Dako Denmark A/S, Glostrup, Denmark) followed by incubation with a high polymer stain (HISTOFINE Simple Stain, Nichirei Bioscience Inc.). Ten crypts from the duodenum, jejunum, and ileum were randomly selected, PCNA‐positive cell numbers per crypt were counted.
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7

Collagen I Immunohistochemistry Protocol

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Immunohistochemical staining was performed following standard protocol using collagen Iα antibody (1:100, NBP1‐30054, Novus Biologicals, Littleton, Colorado) overnight at 4°C, rat anti‐rabbit Ig horseradish peroxidase‐conjugated antibody (Histofine SimpleStain, Nichirei BioSciences, Tokyo, Japan) for 1 hour at room temperature and approximately 3 minutes incubation in 30 mg/ 3,3′‐diaminobenzidine tetrahydrochloride 150 mL 0.05 M Tris‐HCl (7.0)/25 μL H2O2.
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8

Immunohistochemical Analysis of Kidney Tissues

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For immunohistochemistry, kidney tissues were immersed consecutively in 10% formalin and 75% ethanol, and embedded in paraffin. De-paraffinization step was done with xylene and ethanol. Antigen activation was performed using Dako proteinase K for 15 min or Dako real target retrieval solution (Dako, Japan) at 98°C for 40 min, then samples were reacted with F4/80 (#6640, Abcam) or type Ⅳ collagen (#6586, Abcam) diluted at 1:100. Histofine Simple stain (Nichirei Biosciences Inc., Japan) was used for secondary antibody reactions. After TBS wash, DAB reaction was performed for 1–10 min. Slides were stained with Haematoxylin for 60 sec. F4/80 and type Ⅳ collagen were evaluated using Bio-Revo imaging and analysis software (Keyence, Japan).
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9

Immunohistochemical Staining of Tissue Sections

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All tissue samples were fixed in 4% paraformaldehyde overnight and embedded in paraffin. Sections (5 μm) were stained with hematoxylin and eosin using standard protocol, and serial sections were used for immunohistochemical staining. The primary antibodies, which were incubated at room temperature for 1–2 h in blocking buffer (2% BSA in PBS), were rat anti-Red Fluorescent Proteins (clone 5F8, dilution 1:100, Chromotek, 5F8) or mouse anti-GFP (clone 4B10, dilution 1:100, Cell Signaling Technology, 2955). The sections were subsequently incubated with HRP-conjugated secondary antibodies (Histofine Simple Stain; Nichirei Bioscience) at room temperature for 30 min, followed by chromogen development using DAB (Nichirei Bioscience). The stained sections were counterstained with Meyer hematoxylin. Specimens were observed with a reverse BX51 microscope (Olympus).
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10

Immunohistochemical Analysis of Collagen Types

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Paraffin-embedded sections were deparaffinized using xylene and dehydrated through graded alcohols. Slides were pretreated with citrate buffer (Target Retrieval Solution [S1699], 10×; DAKO Japan, Tokyo, Japan) in phosphate-buffered saline solution (PBS) for 20 minutes at 90°C for optimal antigen retrieval. Endogenous peroxidases were quenched using 1.0% hydrogen peroxidase in methanol for 30 minutes at room temperature. Slides were then rinsed with PBS and incubated with 10% goat serum for 30 minutes at room temperature. Subsequently, specimens were incubated with rabbit primary antibodies (type I collagen, 1:100 dilution; Abcam, ab34710 and type III collagen, 1:100 dilution; Abcam, ab6310) at 4°C overnight. After extensive washing with PBS, slides were incubated with a peroxidase-labeled antibody (Histofine Simple Stain; Nichirei Biosciences, Tokyo, Japan) for 30 minutes at room temperature. After extensive washing with PBS, the immunoreaction was visualized by incubating the sections for 3 minutes in 3,3′-diaminobenzidine (Histofine Simple DAB solution; Nichirei Biosciences).
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