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Bovine collagen type 1

Manufactured by Advanced BioMatrix
Sourced in United States

Bovine collagen type I is a natural, animal-derived protein extract from bovine sources. It is a key structural component of the extracellular matrix and provides a framework for cell attachment and proliferation. This product is suitable for various cell culture and tissue engineering applications.

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38 protocols using bovine collagen type 1

1

Ras Signaling Interactome Analysis

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Antibodies to FliI, R-ras, K-ras, H-ras, N-ras, and G3BP1 wer purchased from Abcam. RasGap120 and FliI antibodies were obtained from Santa Cruz. The G3BP1 expression plasmid was obtained from Addgene. Protein G beads and protein Sepharose glutathione beads were purchased from Dynamed. Duolink in Situ Detection Reagents Far Red, Duolink in Situ Probemaker Minus/Plus and Glutathione Sepharose beads were from Sigma Aldrich (Oakville, ON). On-Target siRNA to G3BP1 and Rasgap were purchased from GE Dharmacon (Mississauga, ON). Type 1 bovine collagen was purchased from Advanced BioMatrix (Carlsbad, CA). Transwell, permeable, 24-mm-diameter inserts (8.0-μm pore size; tissue culture-treated polycarbonate membrane) obtained from Costar (Corning). Recombinant K-ras and H-ras proteins were purchased from Abcam. N-ras knockout 293T cell lysate and parental 293T cell lysate were obtained from Novus Biologicals.
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2

3D Collagen Hydrogel Models with Primary Cells

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The primary cells used to build the models were kept as low passage number frozen stocks in liquid nitrogen. The 3D models were grown on Celltreat (Celltreat Scientific Products, Pepperell, MA) 24-well hanging cell culture inserts with a permeable 8 μM PET membrane. The collagen hydrogel was developed using previously defined methods (Gappa-Fahlenkamp and Shukla, 2009 (link)) (Derakhshan et al., 2018 (link)), and consisted of 64.5 vol% 3.1 mg/mL type 1 bovine collagen (Advanced BioMatrix; Carlsbad, CA), 8.1 vol% 10x M199 (Gibco), 13.3 vol% 0.1 N NaOH, and 14 vol% phosphate-buffered saline (PBS). Primary HPFs (PromoCell, Catalog #C-12360 Heidelburg, Germany) were thawed and then directly seeded within the collagen gel solution at a concentration of 75,000 cells/mL, and 0.150 mL of collagen solution was aliquoted to the inner well of the hanging cell culture inserts. Following 45 min of incubation at 37°C 5% CO2 concentration, complete SAEC medium (PromoCell, Catalog #C-21070 Heidelburg, Germany) was added to the bottom well chamber (1 mL), and 0.100 mL of medium was added to the top of the collagen gel. The hydrogels were incubated for 24 h before adding SAECs.
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3

Examining the Role of FliI and IQGAP Proteins

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Rabbit monoclonal antibody to FliI was from Epitomics (Burlington, CA). The protease inhibitor cocktail, nebulin antibody, RIPA buffer, β-actin antibody (clone AC-15), myosin10 antibody, and fluorescein isothiocyanate–conjugated goat anti-mouse antibody and tetra-methyl rhodamine isothiocyanate-phalloidin were obtained from Sigma-Aldrich (Oakville, ON, Canada). Monoclonal antibodies to FliI and IQGAP1 were purchased from Santa Cruz. As additional monoclonal antibody to IQGAP1 and polyclonal antibodies to IQGAP2 and IQGAP3 were obtained from Abcam. Protein G beads and protein Sepharose glutathione beads were purchased from Dynamed. Glutathione Sepharose beads were from Sigma, Aldrich (Oakville, ON, Canada). On-Target siRNA to IQGAP1 was purchased from GE Dharmacon (Mississauga, ON, Canada). Type 1 bovine collagen was purchased from Advanced BioMatrix (Carlsbad, CA).
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4

Fabrication of Collagen Film Substrates

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The collagen films that are ultimately used as substrates for further processing were prepared prior to their fabrication and integration with the NE electronics. The process began with Type I bovine collagen in a 3 mg mL−1 solution (Advanced BioMatrix, Carlsbad, CA, USA). The collagen was gently mixed with 10X phosphate-buffered saline (PBS) and 0.1 M NaOH at a ratio of 13:2:1 by volume until small fragments of collagen started to form. The mixed collagen solution was then cast into an acrylic mold, followed by polymerization at 37 °C and 96% humidity for four days, yielding uniform collagen gels (thickness of 40 mm). These collagen gels were then dried on glass slides in air at 37 °C for 24 h followed by multiple rinses with DI water and air drying, forming dried collagen films (thickness of 40 μm). The collagen films were subsequently removed from the acrylic mold and glass slides for subsequent use as substrates. The entire process was carried out under sterile conditions. Basement Membrane Matrix Matrigel (BD Bioscience, Frankline Lakes, NJ, USA) was diluted with PBS solution to a concentration of 2 mg mL−1 and was used for subsequent fabrication of ECM-NEs.
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5

Collagen Matrix Preparation for Cell Invasion

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To prepare collagen matrix, Type-I bovine collagen (Advanced Biomatrix, 5 mg ml−1) was diluted to 1.5 mg ml−1 in PBS, 1× RPMI and 10x MEM solution to obtain the final concentration. The acidic solution was neutralized with 1 M NaHC03 by titration based on the color of the indicator in RPMI. The pre-polymerized collagen was kept in ice until further use. Cold collagen gel solution was pipetted over the test devices and allowed to incubate at 37 °C for 45 min to gel. In some experiments, the collagen was doped with 100 ng ml−1 of transforming growth factor (TGF)-β or 100 ng ml−1 of Interleukin-8 (IL-8) to stimulate tumor invasion as required.
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6

Primary Rat Hepatocyte Isolation and Culture

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Primary hepatocytes were harvested from male Wistar rats using a two-step in situ collagenase perfusion method according to protocols described previously19 (link),31 (link). Freshly isolated rat hepatocytes were seeded onto the different substrates at a density of 1 × 105 cells/cm2 in 96-well microplates and cultured in 100 μl of William’s E culture medium supplemented with 1 mg/mL bovine serum albumin (BSA), 10 ng/mL epidermal growth factor, 0.5 mg/mL insulin, 5 nM dexamethasone, 50 ng/mL linoleic acid, 100 units/mL penicillin and 100 mg/mL streptomycin. Media was changed daily during the entire culture period. For collagen monolayer culture, neutralized 1.5 mg/ml Type I bovine collagen (Advanced BioMatrix, San Diego, CA, USA) was coated on the surface of the microplates.
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7

Collagen-Embedded Spheroid Invasion Assay

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Four similar size spheroids were obtained upon cell seeding in cell repellent 96-well round-bottomed plates. Spheroids were thereafter embedded into 2.7 mg/ml type I bovine collagen (Advanced BioMatrix, Carlsbad, CA). Once polymerized, the cell collagen matrix was overlayed with a 10% FCS-containing culture medium or NIH 3T3 cell supernatant. The invasion was documented upon image acquisition with an AxioCam ICm 1 camera coupled to an Axiovert 100 microscope and processed with the AxioVision LE64 program (Carl Zeiss, Oberkochen, Germany). The distance invaded by all of the 50 cells furthest from the spheroid center was measured using ImageJ software [67 ]. Median invaded distance was computed upon radius subtraction of a reference time point.
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8

Fabrication of Collagen Film Substrates

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The collagen films that are ultimately used as substrates for further processing were prepared prior to their fabrication and integration with the NE electronics. The process began with Type I bovine collagen in a 3 mg mL−1 solution (Advanced BioMatrix, Carlsbad, CA, USA). The collagen was gently mixed with 10X phosphate-buffered saline (PBS) and 0.1 M NaOH at a ratio of 13:2:1 by volume until small fragments of collagen started to form. The mixed collagen solution was then cast into an acrylic mold, followed by polymerization at 37 °C and 96% humidity for four days, yielding uniform collagen gels (thickness of 40 mm). These collagen gels were then dried on glass slides in air at 37 °C for 24 h followed by multiple rinses with DI water and air drying, forming dried collagen films (thickness of 40 μm). The collagen films were subsequently removed from the acrylic mold and glass slides for subsequent use as substrates. The entire process was carried out under sterile conditions. Basement Membrane Matrix Matrigel (BD Bioscience, Frankline Lakes, NJ, USA) was diluted with PBS solution to a concentration of 2 mg mL−1 and was used for subsequent fabrication of ECM-NEs.
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9

Collagen-based 3D Cell Culture Scaffold

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Type I bovine collagen (6 mg/mL; Nutragen, Advanced Biomatrix) was mixed on ice with 10X DMEM (13.8 mg/mL) with or without phenol red, 10X reconstitution buffer (2.25mg/mL [22 mg/mL sodium bicarbonate and 20 mM HEPES in 0.062 N NaOH]), FBS (8.5% v/v) and L-Glutamine (2 mM). After mixing the solution carefully to avoid bubbles, the pH was adjusted to 7.4 with sterile sodium hydroxide. Cells at different concentrations and ratios were added to the solution and gently mixed. Cell concentration was 5 × 105 cells/scaffold for each cell line (1:1 ratio); 5 × 105 and 2.5 × 105 cells/scaffold (2:1 ratio) and 5 × 105 cells/scaffold for one cell line. Four different trials were tested for this group of scaffolds:
Once the solution was homogenous, it was distributed into tissue culture inserts (0.4 μm pore size, 24 mm diameter, VWR) in 6-well plates, using a volume of 2.5 mL/insert. Plates were transferred to a cell culture incubator (37°C, 5% CO2) for 2h to allow polymerization of collagen. Once the constructs were solidified, 3 mL of warmed cell culture medium was added per well (1.5 mL on top of the gel/inside the insert and 1.5 mL outside/under it (i.e., bottom of the well). Plates were maintained in the cell culture incubator and the medium was changed every two days 35 (link)–37 (link).
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10

Collagen Matrix Preparation for Cell Invasion

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To prepare collagen matrix, Type-I bovine collagen (Advanced Biomatrix, 5 mg ml−1) was diluted to 1.5 mg ml−1 in PBS, 1× RPMI and 10x MEM solution to obtain the final concentration. The acidic solution was neutralized with 1 M NaHC03 by titration based on the color of the indicator in RPMI. The pre-polymerized collagen was kept in ice until further use. Cold collagen gel solution was pipetted over the test devices and allowed to incubate at 37 °C for 45 min to gel. In some experiments, the collagen was doped with 100 ng ml−1 of transforming growth factor (TGF)-β or 100 ng ml−1 of Interleukin-8 (IL-8) to stimulate tumor invasion as required.
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