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8 protocols using 3 isobutyl 1 methyl xanthine (ibmx)

1

Antibody-based detection of sGC subunits

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Polyclonal antibodies specific for sGCα1 and sGCβ1 have been described elsewhere (30). Actin monoclonal antibody (Oncogene Research Products, Boston, USA); collagenase type CLS II (Merck, Netherlands); 8-Bromo-cGMP (BIOLOG, Germany); L-NAME, DETA/NO, DEA/NO, IBMX and GTP (Enzo Life Sciences, Netherlands); BAY 58-2667 was synthesized as described75 (link). All other chemicals were of the highest purity grade available and obtained from Sigma or Merck (Netherlands). DETA/NO and DEA/NO were dissolved in 10 mM NaOH, BAY 58-2667 and YC-1 in DMSO.
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2

Pharmacological Modulation of Neural Activity

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IBMX was obtained from Enzo Life Sciences. Bicuculline and SNAP were obtained from Tocris Biosciences. DNQX and strychnine were obtained from Sigma-Aldrich.
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3

Quantifying Light-Induced cAMP Levels

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ZEM-2S cells were seeded (8×10∧5 cells/well in a 96 well plate) and placed in constant dark (DD) for 3 d. Cells were treated with 100 µM IBMX (3-isobutyl-1-methylxanthine, Enzo Life Science, Plymouth Meeting, PA, USA) 30 min prior to stimulation with blue light (450–475 nm, 87.85 to 95.17 µ watts/cm2) for 1, 5 and 10 min. As a positive control, 10 µM forskolin was applied for 15 min in dark-kept cells. After stimulation, cells were lysed, and the samples assayed according to the manufacturer's protocol (Direct 3′-5′-cyclic adenosine monophosphate enzyme-linked immunosorbent assay (ELISA) kit, Enzo Life Sciences, Plymouth Meeting, PA, USA). The nucleotide concentrations were compared by one-way ANOVA, followed by Tukey, and the difference was considered significant when p<0.05.
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4

Neurotransmitter Receptor Modulation

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IBMX was obtained from Enzo Life Sciences. NorBNI, U50488, and SNAP were obtained from Tocris Biosciences. DNQX, picrotoxin, strychnine, and 6β-naltrexol were obtained from Sigma-Aldrich. SP600125 was obtained from Calbiochem.
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5

Measuring cAMP in INS-1E Cells

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INS-1E cells were washed with Krebs-Ringer Buffer (135 mM NaCl, 5 mM KCl, 1 mM MgSO4, 0.4 mM K2HPO4, 5.5 mM glucose (VWR, 10117), 20 mM HEPES (Thermo Fisher Scientific, 15630–056), pH4.7) and pre-incubated in buffer for 30 min. Following further washing, cells were incubated at 16.7 mM glucose in the presence of 500 µM IBMX (Enzo Life Sciences, BML-PD140-0200) with or without 100 nM Ex4 for 15 min before extraction into 200 µl of 0.1 mM HCl-0.5% Triton X-100 (Sigma Aldrich, X100). cAMP was determined using the Direct cAMP ELISA kit (Enzo Life Sciences, ADI-900-066) accordingly to the manufacturer’s instructions.
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6

Pharmacological Regulation of Smooth Muscle

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STO-609 and GSK1901320 (referred to as GSKi) were synthesized at the Duke University Small Molecule Synthesis Facility. Ionomycin (catalog #10004974) was obtained from Cayman Chemicals and solubilized in DMSO at room temperature, sterile filtered (0.2 μmol/L), and stored at −20°C. The pan-PDE inhibitor, IBMX (catalog #BML-PD140) and PDE1-specific inhibitor, vinpocetine (catalog #BML-PD185) were purchased from Enzo Life Sciences. Sildenafil (catalog #10008671) was obtained from Cayman Chemicals. The nitric oxide synthase (NOS) inhibitors, Nω-Nitro-L-arginine (L-NNA; catalog #N5501) and Nω-Nitro-L-arginine methyl ester hydrochloride (L-NAME; catalog #N5751) were both obtained from Millipore Sigma and solubilized in 1 mol/L HCL and dH2O, respectively. To stain filamentous actin, rhodamine-phalloidin (catalog #R415) was purchased from Thermo Fisher Scientific, dissolved in methanol, and stored at −20°C. The small-molecule PKG inhibitors, RKRARKE (catalog #370654) and KT5823 (catalog #K1388) were both obtained from Millipore Sigma.
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7

Antiviral Compound Screening Protocol

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MG132 (Selleckchem, S2619), gefitinib (Selleckchem, S1025), nigericin (InvivoGen, tlrl-nig/NIG-36-01), brefeldin A (Cell Signaling Technology, 9972S), FTY720 (Santa Cruz Biotechnology, sc-202161A), IBMX, concanamycin A (Enzo Life Sciences, ALX-380-034-C025), tetrandrine (Selleckchem, S2403), U18666A (Cayman Chemical, 10009085), ETP-46464 (Selleckchem, S8050), JIB-04 (Tocris, 4972), nitazoxanide (COVID Box, MMV688991), ketoconazole (COVID Box, MMV637533), AG-1478 (Selleckchem, S2728), caffeic acid (Selleckchem, S7414), thapsigargin (Cell Signaling Technology, 1278S), staurosporine (Cell Signaling Technology, 9953S), and arbidol-HCl (Selleckchem, S2120). Calpain Inhibitor set includes ALLN, calpain inhibitor III, calpeptin, and E-64d used in the viral inhibition assays (208733-1SET, Sigma-Aldrich).
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8

cGMP Measurement in HEK293T Cells

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HEK293T cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% fetal bovine serum, penicillin/streptomycin and Glutamax (Gibco) at 37 °C with 0.05 CO2. Transfection was performed in triplicate using a 96-well Shuttle nucleofector (Lonza). Briefly, 250 ng of plasmid per 2 × 105 cells was transfected using Amaxa solution SF (Lonza) and program CA-138. Three days after transfection, cells were then incubated in DMEM containing 0.75 mM IBMX (3-isobutyl-1-methylxanthine; Enzo life sciences) for 15 min. The cells were next treated with 6.67 nM of BMN 111 (CNP)52 (link) and incubated for another 15 min. The reaction was terminated with 40 μl of lysis solution, and the cGMP concentration was measured by a competitive enzyme immunoassay (Molecular Devices, R8075). Luciferase levels were measured using the ONE-Glo Assay (Promega) and the results are presented as the cGMP/luciferase normalized to the wild-type plasmid transfected cells. For the dose-response curves, the CNP concentrations assayed in triplicate were 33.33, 6.67, 1.33, 0.27, 0.053, 0.0107, and 0.002133 nM. The cGMP concentrations were assayed as above and cellular concentrations calculated assuming 1.6E5 cells/well with a diameter of 35 μm.
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