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2 protocols using anti rpn7

1

Affinity Purification Reagents and Antibodies

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NAC, Vit C, αLA, ATP, CBB-R250, EDTA, FeSO4, glycerol, H2O2, imidazole, NaCl, NaH2PO4, NEM, Nonidet P40, PMSF, puromycin solution, SDS, Tris-HCl, Triton X-100, EZviewTM Red affinity gels (including streptavidin-HRP, anti-myc, and anti-FLAG® M2), anti-actin (1:2000), and anti-FLAG M2 (1 μg/mL) antibodies were from Sigma-Aldrich (St. Luis, MO); USP2, anti-RPN7 (1:1000), and anti-ubiquitin (1:1000) antibodies from Enzo Life Sciences (Farmingdale, NY); anti-RPN6 antibody (1:1000) from Novus Biologicals (Littleton, CO); AcTEV protease, DTT, IPTG, MgCl2, lipofectAMINE®, PLUSTM reagent, and anti-V5 (1:5000) antibodies from Life Technologies (Grand Island, NY); strepavidin-HRP conjugate (1:3000) from GE Healthcare (Piscataway, NJ); Bortezomib from LC Laboratories (Woburn, MA); anti-PCID2 (1:500) and anti-DSS1FL70 (1:500) antibodies from Santa Cruz Biotechnology (Santa Cruz, CA); complete EDTA-free protease inhibitor cocktail from Roche (Indianapolis, IN); anti-eIF3C antibody (1:15,000) from Bethyl Laboratories (Montgomery, TX); anti-His (1:500) antibody from EMD Biosciences (San Diego, CA); anti-RPN3 and anti-DSS1s3259-2 (1 μg/mL) antibodies from Proteintech (Chicago, IL); EcoRV, SgfI, and MluI restriction enzymes are from New England Biolabs (Ipswich, MA).
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2

Molecular Cloning of Tagged Proteasome Subunits and UBLCP1

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DNA fragments encoding proteasome subunits, chaperones, Rad23B and USP14 were amplified from corresponding cDNAs in the human ORFeome collection (v.5.1) and subcloned into pXF6F (3 × FLAG) vector (derived from pRK5, Genentech). HA-, MYC- and GST-tagged UBLCP1 were generated by PCR from UBLCP1 cDNA and subcloned into pXF4H vector (derived from pRK5, Genentech), pXF3HM vector (our laboratory) and pGEX-4T-1 (GE Healthcare), respectively. The deletions and point mutants of UBLCP1 were also generated by PCR. NLS-GFPu plasmid was kindly provided by Ron Kopito (Stanford University, CA, USA). The antibodies were purchased as follows: anti-α1–7 (#ST1049) and anti-phosphoserine (Phosphoserine Detection Kit, #525282) antibodies from EMD Millipore; anti-Rpn1 (#HPA045192), anti-FLAG (#F3165) and anti-γ-tubulin (#T5326) antibodies from Sigma; anti-UBLCP1 (#ab176340) and anti-histone H3 (#ab1791) antibodies from Abcam; anti-MYC (#sc-40), anti-GFP (#sc-8334) and anti-Cyclin D1 (sc-753) antibodies from Santa Cruz; anti-HA (#3724) and anti-p21Cip1 (#2947) antibodies from Cell Signaling Technology; anti-Rpn2 (#PW 9270), anti-Rpn7 (#PW8225), anti-Rpt1 (#PW8825), anti-Rpt3 (#PW8175), anti-Rpt4 (#PW8220), anti-Rpt5 (#PW8770) and anti-Rpt6 (#PW8320) antibodies from ENZO Life Sciences; peroxidase-conjugated goat anti-rabbit and rabbit anti-mouse IgG (#315-035-048) from Jackson ImmunoResearch.
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