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Ultrospec 3100 pro spectrophotometer

Manufactured by Cytiva
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The Ultrospec 3100 pro spectrophotometer is a laboratory instrument used for the quantitative analysis of various substances through the measurement of their absorption of light at specific wavelengths. It is designed to provide accurate and reliable results for a wide range of applications in both research and industrial settings.

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8 protocols using ultrospec 3100 pro spectrophotometer

1

Standardized Preparation of S. aureus

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S. aureus NCTC 10788 was used at the test organism. Cultures were maintained and recovered on pre-poured tryptone soya agar (TSA) plates (E&O Laboratories).
Suspensions of S. aureus were prepared by inoculating 20 mL tryptone soya broth (TSB) with a single colony from the refrigerated stock. Inoculated media was then placed in an orbital shaker incubator and incubated at 37°C for 18–24 h. Following incubation, cultures were centrifuged at 3500 g for 10 min. Spent media was discarded and cells were washed in sterile tryptone sodium chloride (TSC; 8.5 g/L sodium chloride, 1 g/L tryptone). After washing, samples were recentrifuged and pellets resuspended in fresh TSC supplemented with 0.3% w/v bovine serum albumin (BSA), to simulate soiling of PPE with salivary proteins. Bacterial cell density was adjusted to 1–5 × 109 cfu/mL by equilibrating to A630 2.0–2.2 using an Amersham UV/Vis Ultrospec 3100 pro spectrophotometer.
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2

Cultivation of Synechocystis sp. PCC6803

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Synechocystis sp. PCC6803 cells from a strain collection at the Carnegie Institution at Stanford were grown from an original single colony of phototaxis-positive cells in BG-11 medium (32 (link)) at 30°C with continuous shaking at 100 rpm under overhead warm white fluorescent light (Super Saver Warm white; F40WW/SS; 34 W). The incident fluence rate was 10 μE m−2 s−1. All imaging experiments were performed using exponentially growing cells with an optical density at 730 nm (OD730) of 0.8 (33,000 cells/μl) as measured with an Ultrospec 3100 Pro spectrophotometer (Amersham Biosciences, Inc.).
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3

Protein Concentration Measurement Methods

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Protein concentration was measured with the method of Bradford, using BSA as standard [36 (link)]. In an alternative procedure, protein concentration of the purified 6-His-hFADS6 was estimated by absorbance spectra, which were recorded on an Ultrospec 3100 pro spectrophotometer (Amersham Biosciences, Piscataway, NJ, USA), essentially as in [25 (link)]. To this aim, the contribution of the bound FAD had to be subtracted from the A280 readings. Because A280 for both free FAD and hFADS6-bound FAD is 1.7-fold A450, the A280, actually due to the apo-protein, may be calculated from the Equation:
The protein concentration was then estimated by using ε280 (47.705 mM−11·cm−1, 1.247 mg/mL−1·cm−1), as calculated from the protein sequence by using the ExpasyProtParam tool (Swiss Institute of Bioinformatics, Lausanne, Switzerland). Measurements made by either the spectrophotometric or the Bradford method differed by no more than 7%. The FAD/protein monomer ratio (given as percent flavinylation, Fl%) could be estimated from the absorbance spectrum by considering:
where 0.23 is the ε450 (FAD)/ε280 (apo-enzyme) ratio.
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4

SEM Analysis of Biopolymer Gel Coatings

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For scanning electron microscopy (SEM), mesh fragments (1 × 1 cm2) were coated by immersion in the formulated gels (n = 3 each) under sterile conditions and the coating was air-dried overnight at room temperature, in a Telstar AV 30/70 type-II vertical laminar flow hood (Telstar S.A., Madrid, Spain). Dried samples were placed onto aluminium pin stubs, metalized with gold palladium and examined in a JSM-IT500 InTouchScope™ SEM (JEOL Ltd., Akishima, Tokio, Japan). Uncoated meshes (n = 3) were included as control.
Spectrophotometric analyses were performed to record the UV–Vis absorption spectra of CHX- and RIF-loaded biopolymer gels. To determine the spectrum of the gel carrier, measurements were also performed in drug-free 1% CMC. Freshly prepared gels were allowed to stabilize for 24 h at room temperature prior to carry out the measurements, which were recorded in triplicate. An Ultrospec 3100 Pro spectrophotometer (Amersham Biosciences, Little Chalfont, UK) with a wavelength accuracy of 1 nm, a 10 mm matched quartz cell and in the spectral range of 200 to 800 nm, was used. To avoid exceeding the detection threshold of this technique, RIF-gel concentration was diluted (1:3) in CMC 1%.
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5

ABCG2 ATPase Activity Assay

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ATPase activity was determined as previously described by Ambudkar (1998) [41 (link)]. Total membranes of High five cells overexpressing ABCG2 were used (5 μg protein/tube, final volume 100 μL). The membranes were mixed with assay buffer (50 mM Tris-HCl pH 6.8, 150 mM N-methyl-d-glucamine (NMDG)-Cl, 5 mM sodium azide, 1 mM EGTA, 1 mM ouabain, 2 mM DTT and 10 mM MgCl2) in the presence or absence of sodium orthovanadate at 0.3 mM. The membranes were treated with 4B in a range of 0.1–2.5 μM and incubated for 20 min at 37 °C with ATP (5 mM). After this period, 100 μL of 5% SDS, 400 μL of Pi solution (sulfuric acid 36.2 N, water, ammonium molybdate and antimony potassium tartarate) and 200 μL of 1% ascorbic acid were added. After 10 min, the absorbance was measured at 880 nm using Ultrospec 3100 pro spectrophotometer (Amersham Biosciences, UK).
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6

Spectrophotometric Analysis of Bacterial Growth

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Spectrophotometric assays were carried out to determine whether the presence of the coated meshes inhibited the bacterial growth in culture. As previously described, samples from the different groups (n = 6 per group per strain) were immersed in 3 mL of LB broth, inoculated with 1 mL of the corresponding bacteria and incubated 37 °C for 24 h. As blank, mesh samples immersed in 3 mL of LB broth plus 1 mL of sterile 0.9% saline were kept under the same conditions. Following incubation, the liquid was aspirated, vortexed, and measured by spectrophotometry (OD600) using an Ultrospec 3100 Pro spectrophotometer (Amersham Biosciences, Little Chalfont, UK). Results were expressed as the mean absorbance recorded for the different study groups.
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7

Characterization and Analysis of Organic Compounds

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Commercial reagents were purchased from Acros Organics, Aldrich, and Fluka. Solvents were used without further purification and distillation. Column chromatography was carried out on silica gel 60 0.040–0.063 mm (Merck, Darmstadt, Germany). Thin layer chromatography was performed on silica gel 60F254 aluminum foil (Merck, Darmstadt, Germany). NMR spectra were recorded on an AMX III-400 spectrometer (Bruker, Billerica, USA) with an operating frequency of 400 MHz and 300 MHz for 1H NMR (solvent—DMSO-d6, Me4Si as internal standard) and 100.6 MHz for 13C NMR. UV spectra were recorded on an Ultrospec 3100 pro spectrophotometer (Amersham Biosciences, Chicago, USAs) in ethanol. High-resolution mass spectra were recorded on a Bruker Daltonics MicrOTOF-Q II device using electrospray ionization mass spectrometry (ESI-MS). The measurements were carried out in the mode of positive ions in accordance with the previously applied conditions [32 (link)].
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8

Cytokine-Responsive Gene Expression Analysis

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Real-Time PCR was performed to evaluate the expression of cytokine responsive genes as previously described (14 ). Briefly, total RNA was isolated from the cultured PBMCs with the use of an RNeasy RNA Isolation Kit (Qiagen, Valencia, CA) and quantitated using the Ultrospec 3100 Pro spectrophotometer (Amersham Pharmacia Biotech, Piscataway, NJ). Reverse transcription was performed using 2 μg total RNA and random hexamers (Perkin-Elmer, Norwalk, CT) as primers for first-strand synthesis of cDNA. The resulting cDNA (2 μL) was used as a template to measure the levels of mRNA for OAS1 (2’,5’-oligoadenylate synthetase 1), IFIT2 (interferon-induced protein with tetratricopeptide repeats 2), IFN-γ (interferon-gamma), CIS (cytokine-inducible SH2 domain-containing protein), CD69, SOCS1 (suppressor of cytokine signaling 1), CXCL10 (chemokine [C-X-C motif] ligand 10) and PIM-1 genes by Real-Time PCR using pre-designed primer/probe sets (Applied Biosystems, Foster City, CA) and 2x Taqman Universal PCR Master Mix (Applied Biosystems). Pre-designed primer/probe sets for human β-actin or GAPDH, housekeeping genes, were used as an internal control in each reaction well.
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