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Proteoextract subcellular proteome extraction kit s pek

Manufactured by Merck Group
Sourced in Spain, United States, United Kingdom

The ProteoExtract subcellular proteome extraction kit (S-PEK) is a laboratory tool designed to extract and separate proteins from different cellular compartments. The kit provides a standardized and efficient method for the fractionation of cellular proteins, enabling researchers to study the proteome of specific subcellular organelles or regions.

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5 protocols using proteoextract subcellular proteome extraction kit s pek

1

Subcellular Proteome Extraction

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ProteoExtract® Subcellular Proteome Extraction Kit (S-PEK) from Merck (Spain) was used.
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2

Subcellular Fractionation of Podocyte Extracts

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The subcellular fractionation of a confluent 10 cm2 plate podocyte extracts was performed using the ProteoExtract®Subcellular Proteome Extraction Kit (S-PEK, Merck Chemicals Ltd) following the manufacturer’s instructions. The kit enables the differential extraction of proteins according to their subcellular localisation and yields proteins in their native state. ProteoExtract®Subcellular Proteome Extraction Kit yields the total proteome fractionated into four subproteomes of decreased complexity. With Extraction Buffer I cytosolic proteins are released (fraction 1). Subsequently, membranes and membrane organelles are solubilised with Extraction Buffer II, without impairing the integrity of nucleus and cytoskeleton (fraction 2). Next, nucleic associated proteins are enriched with Extraction Buffer III (fraction 3). Components of the cytoskeleton are finally solubilised with Extraction Buffer IV (fraction 4).
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3

Subcellular Fractionation and Protein Analysis

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5 × 106 cells, including HEK293T, MCF-7, MDA-MB-231, and MCF-12F were lysed using the ProteoExtract subcellular proteome extraction kit (S-PEK) (Millipore, 539790), following the manufacturer’s instructions. In particular, cytosolic fraction (F1) and nuclear fraction (F3) were evaluated by western blotting to measure the levels of BCA2, NF-κB (RELA/P65), IRF1, Lamin A/C, UbcH5, and β-actin using specific antibodies (Table 1). Lamin A/C and UbcH5 were used to determine the purity of nuclear and cytoplasmic fraction, respectively. β-actin was used as a loading control. Each experiment was repeated three independent times.
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4

Cellular Protein Fractionation and Analysis

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Five million HEK293T cells were transfected with 5 μg VR1012, hBCA2, or fBCA2. Forty-eight hours later, the cells were lysed and proteins were extracted to obtain cytoplasmic and nuclear extracts using the ProteoExtract® Subcellular Proteome Extraction Kit (S-PEK), following the manufacturer’s instructions (Millipore, Bedford, MA, United States). The cytoplasmic fraction and nucleic protein fraction were analyzed by western blotting. Equal protein loading for cytoplasmic and nuclear fractions was confirmed by blotting against GAPDH.
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5

Subcellular Fractionation and Western Blotting

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Five million (5 × 106) 293T or HeLa cells were transfected with 5,000 ng of either an empty vector (pcDNA5) or a vector encoding HA-BCA2 (pcDNA5-HA-BCA2) or a BCA2 mutant (pcDNA5-HA-A228A231). Forty-eight hours later, the cells were lysed, and sequential extraction of proteins from specific compartments and/or organelles within the cell was performed using a ProteoExtract subcellular proteome extraction kit (S-PEK) (Millipore, Bedford, MA), following the manufacturer's instructions. The cytoplasmic fraction (F1) and nucleic protein fraction (F3) were analyzed by Western blotting using HA-, IκBα-, p100/p50-, and RELA/p65-specific antibodies (Table 1). Equal protein loading for the cytoplasmic and nuclear fractions was confirmed by blotting against β-actin (a cytoplasmic and nuclear marker). The purity of the nuclear and cytoplasmic fractions was determined by detecting lamin A/C (a nuclear marker) and LAMP-1 (a cytoplasmic marker), respectively.
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