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2 protocols using p lck

1

Flow Cytometric Analysis of Pulmonary Cells

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Lungs were isolated and chopped into very small pieces using fine surgical scissors followed by incubation in digestion cocktail containing collagenase and DNAse I in RPMI-1640. This led to formation of single cell suspension of pulmonary cells which was then utilized for flow experiment as done earlier [22 (link)]. Single cells from pulmonary tissue were first incubated with monoclonal antibodies against cell surface antigen, i.e., CD4 (BioLegend, San Diego, CA, USA) fluorescently conjugated to APC-Cy7/APC/FITC. After the normal step of fixation and permeabilization (Miltenyi Biotech, Bergisch Gladbach, North Rhine-Westphalia, Germany) of pulmonary cells in the suspension, cells were then labeled with monoclonal antibodies against intracellular proteins, such as p-LCK, p-ITK, p-PLCγ, NFATc1, p-NFkB, IL-4, IL-5, IL-10, Foxp3, GATA-3, iNOS, and Nitrotyrosine (R&D Systems, Minneapolis, MN, USA; BioLegend, San Diego, CA, USA). Immunolabeled leukocytes in pulmonary cell suspension were then run and 10,000 events were acquired on a flow cytometer (Beckman Coulter, Indianapolis, IN, USA), followed by evaluation of fluorescently conjugated intracellular/cell surface proteins using Cytomics FC 500 software as stated before [22 (link)].
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2

Immunoblot Analysis of Signaling Proteins

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Cellular lysates were mixed with Laemmli sample buffer, heated at 95°C for 5 minutes and separated on NuPAGE Bis-Tris gels by electrophoresis and transferred to nitrocellulose membranes using the iBlot transfer system (Thermo Scientific). Membranes were incubated in previously heated 3% fat-free dry milk for 1 hour at room temperature followed by overnight incubation with primary antibodies. Proteins were detected with Super Signal West Dura (Thermo Scientific #34075) using a Bio-Rad ChemiDoc MP imaging system. Immunoblots were quantified using ImageJ (NIH) by stripping and reprobing the same membrane for the indicated loading controls for normalization. Integrated Density (IntDen, the product of area and mean gray value) was calculated for each condition. In each experiment, the IntDen value was obtained for each condition, and was normalized to the value obtained in the control stimulated LV condition using the following formula: (IntDen value/ IntDen value at stimulated LV). Primary antibodies used were: pLck (Y394, R&D Systems), pZAP-70 (Y319), total Lck, total ZAP-70, total LAT and anti-HA from Cell Signaling, pLAT(Y226) from Biolegend, beta-Actin and GAPDH from Sigma.
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