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5 protocols using anti atm ps1981

1

Western Blot Analysis of Cell Signaling

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Samples were treated with lysis buffer [Tris–HCl 50mM pH7.4, 10% NP-40, 0.25% NaDesoxycholate, EDTA 1mM, NaCl 150mM, PMSF 1mM, protease inhibitor cocktail (Roche)] and loaded onto pre-cast 4–12% gradient acrylamide gels (NuPAGE, Invitrogen). After electro-blotting, filters were incubated with anti-AKTIP (Sigma), anti-TRF2 (Novus Biologicals), anti-actin-HRP conjugated (Santa Cruz), anti-cyclin A (Santa Cruz), anti-cyclin B (Santa Cruz), anti-cyclin E (Upstate Biotechnology), anti-p53-pSer15 (Cell Signaling Technology), anti-p53 (DakoCytomation), anti-ATM-pS1981 (Rockland Immunochemicals), anti-ATM (Genetex), anti-ChK1-PSer345 (Cell Signaling Technology), anti-AKT (Cell Signaling Technology), anti-PCNA (Santa Cruz), anti-RPA70 (Santa Cruz), or anti-TRF1 (Santa Cruz). Filters were then incubated with appropriate HRP-conjugated secondary antibodies (Santa Cruz), which were detected using the enhanced chemiluminescence system (ECL plus, Amersham). Signals were quantified with Image J software.
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2

Immunofluorescence Analysis of DNA Damage Response

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Human mesenchymal stem cells were plated on μ-Slide 8 well ibitreat (Ibidi, Martinsried, Germany), fixed with 4% paraformaldehyde, permeabilized with 1% Triton X-100 and blocked with 6% (wt/vol) BSA (Sigma-Aldrich) and 2.5% (vol/vol) normal goat serum (Sigma-Aldrich). Cells were then stained with the following primary antibodies: mouse monoclonal antibodies anti-phospho-Histone H2AX(Ser139) 1:500 (clone JBW301; Millipore, Billerica, MA, USA) and anti-ATMpS1981 1:300 (clone 10H11.E12, Rockland) or rabbit polyclonal antibody against 53BP1 1:500 (Novus Biological, Cambridge, UK) for 2 hrs at 4°C. Secondary antibodies were: Alexa 488 or Alexa 546 conjugated goat anti mouse and Alexa 546 conjugated goat anti-rabbit (all 1:500; Molecular Probes Inc.). Nuclei were stained with 0.1 μg/ml 4′-6-diamidino-2-phenylindole (DAPI; Sigma-Aldrich) and slides mounted by using Mowiol solution (Calbiochem). Fluorescence images were obtained with a TCS-SPE, Leica Microsystem at 63× magnification. γH2AX foci quantification was performed counting at least 300 cells for each time-point.
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3

Bleomycin-Induced ATM Phosphorylation

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For examination of phosphorylation of ATM after bleomycin treatment, lymyphoblastoid cells in logarithmic growth were treated in triplicate with 0, 10, and 30 μg/ml bleomycin for 1 h at 37°C. Immunoprecipitation was performed with the FISH-antibody (Anti-ATM, rabbit polyclonal, Novus) and magnetic beads (Dynal Biotech ASA/Invitrogen). The separated proteins were probed with anti-ATM pS1981 (Rockland, monoclonal, mouse), and reprobed with an anti-ATM antibody (Abcam Cambrige, UK) [74 ].
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4

Cellular DNA Damage Response Analysis

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Anti-γH2AX (Millipore, 05–636, 1∶200); anti-ATM pS1981 (Rockland, 200-301-400, 1∶400); anti-pS/TQ (Cell Signalling, 2851, 1∶200); anti-53BP1 (mouse, gift from T. Halazonetis, University of Geneva, 1∶20; rabbit, Novus NB100-304, 1∶200); anti-BrdU (Becton Dickinson, 347580, 1∶20); anti-p16 (H-156) (Santa Cruz Biotechnologies, 1∶500 for immunoblotting and 1∶200 for immunofluorescence); anti-vinculin clone hVIN-1 (SIGMA, 1∶5000).
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5

Immunofluorescence and Telomere FISH Assays

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Immunofluorescence staining and iFISH assays were performed as described64 (link). The following primary antibodies were used: anti-human TRF1 (5747, 1 μg/ml)63 (link), anti-ATM pS1981 (200-301-400 or 600-401-400, 7.5 μg/ml, Rockland Immunochemicals, Limerick, PA, USA), anti-53BP1 (#4937, 1:100, Cell Signaling Technology), anti-SMC1 pSer966 (BL311, 2 μg/ml, Bethyl Laboratories, Montgomery, TX, USA) and anti-γH2AX (JBW301, 2 μg/ml, BD Biosciences, San Jose, CA, USA). For telomere PNA FISH, cells were treated with 0.25 μg/ml colcemid for 3 h, trypsinised and swollen in 0.6% sodium citrate for 30 min at 37 °C. Metaphase spreads were prepared on slide glass and telomere PNA FISH was performed as described16 (link). Images were processed with Photoshop CS5 (Adobe).
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