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329 protocols using fibronectin

1

Microchannel Seeding and Culture

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The microchannel was coated with gelatin by incubating with 0.1% gelatin (Wako Pure Chemical Industries) at 37°C for 30 min or with fibronectin by incubating with 0.1 mg/mL fibronectin (Becton, Dickinson and Company, Franklin Lakes, NJ) at 4°C for 16 h, followed by 1 h at 37°C. After washing with a fresh medium, 20 μL PASMC suspension (1.5 × 10 6 cells/mL) was introduced into the microchannel. The device was wrapped with a wet lint-free wiper (BEMCOT M-1, Asahi Kasei, Tokyo, Japan) to prevent desiccation, and incubated under static conditions for 16 h in a 5% CO2 incubator at 37°C. After incubation, the cells were cultured under fluidic or static conditions.
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2

Astrocyte Adhesion on ECM Coatings

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Nunc Lab Tek II 2-well chamber slides (0.7 cm2) were coated in the following extracellular matrix (ECM) components: fibronectin, collagen IV, matrigel (phenol red-free, growth factor reduced), and collagen I. fibronectin, collagen IV, and matrigel (BD Biosciences) were diluted to concentrations of 100 μg mL−1 in phosphate buffered saline (PBS, Invitrogen). Wells were coated with 100 μL cm−2 diluted ECM proteins for 2 hours at 4°C. Wells were washed once with PBS before cell seeding. Rat tail collagen I (BD) was diluted to a concentration of 100 μg mL−1 in 0.02 M acetic acid. Wells were coated for 1 hour at 37°C and washed three times with PBS. Uncoated glass was used as a control. Astrocytes were seeded on the coated dishes at a concentration of 5,000 cells cm−2. Low magnification images of cells on different surface coatings are shown in Figure S1. For the co-culture experiments, HBMECs were seeded onto 2-well chamber slides at a concentration of 50,000 cells cm−2. Cells were grown to confluence for 48 hours in M199 media. After confluence was reached, the medium was replaced with DMEM/f12 and astrocytes were seeded on top of the monolayer at a density of 5,000 cells cm−2. In all experiments, astrocytes were fixed after 24 hours. All experiments on coated surfaces were performed in triplicate.
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3

Cell-ECM Adhesion Signaling Assay

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Cells were kept in suspension or replated on ECM (10 μg/ml, laminin or fibronectin, BD Biosciences)-precoated dishes or coverglasses in the absence (in the case of fibronectin) or presence of low serum (2%, in the case of laminin) for 1 h before being analyzed for cell-ECM adhesion signaling by standard western blotting or for the formation of focal adhesions by indirect immunofluorescence, as described previously [27 (link)]. Function blocking antibodies against human integrin α6 (Millipore, 20 μg/ml) were preincubated with cells by rocking at 37°C for 1 h prior to replating. Pharmacological inhibitors were added to the culture media for 24 h or to replating media at the reseeding time.
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4

Nucleic Acid Delivery Efficiency Analysis

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Chinese hamster ovary cells (CHO-K1) (ATTC, Manassas, VA, USA) and normal human epidermal keratinocytes (nHEKs) (Cell Systems, Troisdorf, Germany) were used to analyze nucleic acid delivery efficiencies by FLs. Before treatment, CHO-K1 cells were maintained in DMEM-F12 culture medium (Sigma-Aldrich, Darmstadt, Germany) supplemented with 10% fetal bovine serum and a 1/100 dilution of an antibiotic solution (10,000 units penicillin and 10 mg/mL streptomycin in 0.9% NaCl, (Sigma-Aldrich Darmstadt, Germany)). nHEK cells were cultured in DermaLife® K Keratinocyte Culture medium (CellSystems, Troisdorf, Germany) with manufacturer’s supplements lacking tumor necrosis factor (TNF). For experiments on cortical neurons, cells were isolated from rat embryos and cultured as described previously [66 (link)]. All cells were continuously kept at 37 °C and 5% CO2 in a humidified atmosphere. Cell confluence was kept below 80%. Then, 24 h before fusion 60,000 cells were seeded on fibronectin (BD Biosciences, San José, CA, USA) coated Petri dishes (Ø = 3.5 cm) (20 μg/mL fibronectin (BD bioscience) for 30 min at 37 °C) and cultivated.
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5

Melanoma Cell Adhesion Assay

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The flat bottom 96-well plates were coated with fibronectin (10 μl/ml, BD Biosciences) at 4°C overnight and then blocked with 2% BSA in PBS at 37°C for 2 h. Melanoma cells (1 × 105/ml) pre-treated with different concentrations of baicalein or baicalin for 72 h were seeded into fibronectin-pre-coated 96-well plates (10 μl/well) in the medium without FBS and incubated for 45 min. After washing three times with PBS to remove non-adherent cells, the cells attached on the plates were fixed with 4% formaldehyde for 4 min and stained with 0.03% crystal violet for 15 min. Adherent cells were counted and averaged in 10 fields at a high (×400) magnification with a microscope (Liu et al., 2015 (link)).
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6

Real-Time Cell Invasion and Migration Assay

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Cell assays were performed on a Real-Time Cell Analyzer Dual Plate (RTCA DP) Instrument, xCELLigence System (ACEA Biosciences) [18 (link)]. The method is based on real-time monitoring of cell invasion, migration or adhesion and captures cell responses during the entire course of the experiment. In the migration assay, CIM plates (cell invasion and migration) were coated with fibronectin (10 μg/ml; BD Biosciences) on the down-side of the microporous PET membrane for 30 min at room temperature and on the upper-side for 2 hrs at 37°C. Excess fibronectin was removed and wells were washed with phosphate buffer saline (PBS). Lower chambers were filled with complete medium and upper chambers with serum-free medium. 2×104 cells were plated per well. Cathepsin X specific inhibitor AMS36 at 10 μM concentration was added as required to the upper and lower chambers. DMSO (0.1%) was used as a control. When using cathepsin X [19 ], 2 μM enzyme was added to the upper and lower chambers.
In the invasion assay, the down-side only of the membrane was coated with fibronectin and the upper-side with 50% Matrigel (20 μl; BD Biosciences) in serum-free medium (30 min at 37°C). 3×104 cells were plated per well.
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7

Islet Attachment and Spreading Assay

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Fourteen millimeter microwells of glass bottom culture dishes (MatTek Corporation) were either incubated with growth factor-deprived matrigel, fibronectin or collagen IV (all BD Bioscience) at a concentration of 5 μg cm−2 (fibronectin and collagen IV), or at a 1:100 dilution in a total volume of 200 μl (matrigel). Glass bottom dishes were incubated for at least 1 h at 4 °C and washed several times before control and ILK cKO islets were plated in their normal culture medium. The islets were cultured for 7 days before attachment and spreading was assessed. Subsequently, islets were fixed in 4% paraformaldehyde for 1 day at 4 °C and stained for F-actin using phalloidin, fluorescently labelled with AlexaFluor 488 (Invitrogen, A12379) at a 1:50 dilution.
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8

Prostate Cancer Cell Line Cultivation and Characterization

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Human prostate cancer cells, LAPC4, VCaP, DU145, PC-3, and LNCaP cells were obtained from the ATCC (Manassas, VA), which also provided authentication of all cell lines. The cells were grown in ATCC-recommended medium supplemented with 10% fetal bovine serum, 100 U/ml penicillin and 100 μg/ml streptomycin. The authenticated human prostate carcinoma C4-2 was purchased from UroCor. Inc (Oklahoma City, OK) and grown in T medium containing 5% FBS. Cells from each of cell line were frozen at early passages and kept in liquid nitrogen providing a stock for cultured cells that were used within 6 month after thawing. Tetracycline responsive PC-3 cells were maintained in media recommended by ATCC for parental PC-3 cells supplemented with 10% Tet system-approved FBS from Clontech (Mountain View, CA). All culture media were purchased from Life Technologies (Carlsbad, CA); fetal bovine serum (FBS) was purchased from Sigma-Aldrich (St. Louis, MO). Doxycycline (Dox) was from Clontech. Collagen type I, fibronectin, and Matrigel were from Becton Dickinson Biosciences (Bedford, MA). CellTracker™ Green CMFDA was from Life Technologies. Bisindolylmaleimide I (BIM-I) was purchased from AdipoGen (San Diego, CA) and phorbol 12-myristate 13-acetate (PMA) was purchased from Sigma-Aldrich. AZD5363 and LY294002 were purchased from Selleckchem (Houston, TX).
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9

Western Blot Analysis of Focal Adhesion Kinase

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Cells were plated and allowed to attach overnight. Cells were harvested, lysed and analyzed by western blot as described previously.(45 (link)) Membranes were probed with antibodies for fibronectin (Becton Dickinson, San Jose, CA), pFAK (Y397), pFAK (Y576/577), FAK (Cell Signaling Technologies, Danvers, MA), TAOK2 (Santa Cruz Biotechnologies, Dallas, TX), and GAPDH as a loading control (Sigma, St. Louis, MO).
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10

Murine ESC Neuronal Differentiation and Oxidative Stress

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Murine ESC of the D3 line were cultured and induced to differentiate into neuronal precursors, as previously described (31 (link)). Briefly, ESC were grown as UD monolayer cultures in DMEM (Life Technologies, Grand Island, NY) containing leukocyte inhibitory factor (Millipore, Billerica, MA) for 4 days, then differentiation was induced by forming embryoid bodies in nonadherent culture dishes in media without leukocyte inhibitory factor but containing 0.5 μmol/L retinoic acid (Sigma-Aldrich) for 4 days. Embryoid bodies were placed into adherent culture dishes with the same media as used when forming embryoid bodies for 1 day, then the media were replaced with DMEM/F-12 (Life Technologies) containing fibronectin (Becton Dickinson), insulin, transferrin, and selenium (all from Sigma-Aldrich) for 4 additional days to select for differentiating neuronal precursors.
Oxidative stress was induced by adding 10 μmol/L AA to the media used during selection of neuronal precursors, as described (31 (link)). This concentration of AA has been shown to significantly increase markers of oxidative stress and to inhibit Pax3 expression by D3 ESC (31 (link),32 (link)). A total of 10 μmol/L of the DNA methyltransferase inhibitor, 5-azacytidine (AzaC, Sigma-Aldrich), was added to the media while culturing UD ESC or while selection for neuronal precursors.
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