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20 protocols using tecnai g2 20 microscope

1

TEM Analysis of Nanoparticles' Impact on E. coli

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The impact of nanoparticles on Escherichia coli bactericidal was analyzed using TEM. Samples were placed on a grid made of copper coated with carbon (200-mesh) and examined with the Tecnai G2 20 microscope (FEI, Amsterdam, The Netherlands) [45 (link), 48 (link)].
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2

Electron Tomography of Epon-embedded Sections

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Epon embedded sections (200–250 nm) were collected on slot grids, poststained with 2% aqueous uranyl-acetate followed by Reynold's lead citrate. For image alignment during tomogram reconstruction 10 nm gold beads Aurion (Wageningen, 410.011) were added as fiducial markers. Room temperature tilt series were acquired at a Tecnai G2 20 microscope (FEI) operated at 200kV and equipped with an Eagle 4 k HS CCD camera (FEI). Dual axis tilt series were collected using the SerialEM acquisition software with a tilt range from −60° to +60° with one degree increments (Mastronarde, 2005 (link)). Tomogram reconstruction and modelling were done using the IMOD software (Kremer et al., 1996 (link)). To eliminate noise in the isosurfaced model, binning of the original data, filtering for a minimum size of structures, and masking with the cuticulosome perimeter object were used.
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Transmission Electron Microscopy of PLA Films

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TEM images were obtained with an FEI Tecnai G2 20 microscope (FEI, Hillsboro, OR, USA) at the accelerating voltage of 200 kV. For the TEM sample preparation, PLA films were embedded in epoxy resin (Araldite CY212). After a 48 h curing, they were cut with ultramicrotome at 80 nm thickness (DiATOME 45° diamond knife, DiATOME ltd., Nidau, Switzerland). The thin sections floating on the knife’s water surface were deposited on carbon-coated grids and air-dried overnight.
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4

Room Temperature Electron Tomography

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For room temperature electron tomography, 200 nm sections were made on a Leica UCT ultramicrotome (Leica Microsystems). After collecting the sections on a 50‐mesh Cu/Pd grid (Gilder Grids, Lincolnshire, UK), previously coated with a supporting film of formvar, 10 nm gold (Aurion) was put onto both sides of the section by incubating the grid in a drop of concentrated gold solution for 3 min. Tilt series were acquired at a Tecnai G2 20 microscope (FEI) equipped with an Eagle 4k HS CCD camera (FEI) and operated at 200 kV. Tilt series were collected with a tilting range from –60° to +60° at 1° increment. For data acquisition and processing the IMOD software from the Boulder Laboratory for 3D Electron Microscopy of Cells, University of Colorado Boulder was used.
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5

Electron Tomography of Intracellular Inclusion Bodies

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For room temperature, electron tomography sections of a nominal thickness of 200 nm were made on a Leica UCT ultramicrotome (Leica Microsystems, Vienna, Austria). The sections were collected on a 50 mesh Cu/Pd grid (Gilder Grids, Lincolnshire, UK), previously coated with a supporting film of formvar, post‐stained with 2% aqueous uranyl acetate followed by Reynold's lead citrate. For tomogram alignment, 10 nm gold (Aurion) beads were put onto both sides of the section by incubating the grid in a drop of concentrated gold solution for 3 min. Tilt series were acquired at a Tecnai G2 20 microscope (FEI, Eindhoven, The Netherlands) equipped with an Eagle 4 k HS CCD camera (FEI, Eindhoven, the Netherlands) and operated at 200 kV. Dual‐axis tilt series were collected with a tilting range from −60° to +60° each at 1° increment. For data acquisition, processing and modelling the IMOD software from the Boulder Laboratory for 3D Electron Microscopy of Cells, University of Colorado Boulder, was used.
Videos S1 and S2 result from cells prepared for TEM taking samples in 20 nm distances. By fusing all images of different microscopy heights, a densitometric model can be obtained showing the native structure of intracellular inclusion bodies. Videos S1 and S2 thus show the imaging at different heights, whereas Figure 1E,F shows the results of the densiometric model.
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Characterization of Lead Sulfide Colloidal Quantum Dots

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The morphology of PbS CQDs film was measured by scanning electron microscope (SEM, FEI NovaNanoSEM450) and atomic force microscope (AFM, SPM-9700 Shimadzu Co.,Japan). Transmission electron microscopy (TEM) images were obtained using FEI Tecnai G2 20 microscope with a LaB6 filament operated at 200 KV. The absorption spectra were measured by Shimadzu UV-3600 plus spectrophotometer. The crystal structure of PbS CQDs film was identified by X-ray diffraction (XRD, Philips, X pert pro MRD, Cu Kα radiation) with a step of 0.013°. The Fourier transform infrared (FTIR) spectra of PbS CQDs film were investigated using VERTEX 70 ATR-FTIR spectroscope (Bruker Co., Germany). The X-ray photoelectron spectroscopy (XPS) measurements were performed on AXIS-ULTRA DLD-600W Ultra spectrometer (Kratos Co. Japan).
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7

Comprehensive Nanoparticle Characterization

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A drop of the aqueous suspension of nanoparticles was added onto a piece of the carbon-coated copper grid, dried under ambient conditions, and then viewed under a transmission electron microscope (TEM; FEI Tecnai G220 microscope, FEI, Netherland) to examine the nanoparticle morphology. The morphology of the samples was characterized by scanning electron microscopy (SEM; Hitachi S-4800, Japan). The structure was characterized by X-ray diffraction (XRD; MAXima_X 17-XRD6000, China). The surface chemical composition and chemical states of the HCDs were determined by X-ray photoelectron spectroscopy (XPS; Rigaku D/MAX-2400, Thermo Scientific, USA). UV–visible spectrophotometry (RF-5301, Hitachi, Shimadzu, Japan) was used for the characteristic absorption peak. The zeta potentials were determined using a Horiba SZ-100 nanoparticle analyzer (Horiba, Kyoto, Japan) at 25 °C.
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8

Characterization of Metallic Nanoparticles

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The morphological features of the synthesized AgNPs and AuNPs were analyzed by transmission electron microscopy (TEM) using a FEI Tecnai G2 20 microscope (FEI Corporate Headquarters, Hillsboro, OR, USA) at an acceleration voltage of 200 kV. The hydrodynamic particle size distribution of the samples was assessed by dynamic light scattering (DLS) analysis using a Zetasizer Nano Instrument (Malvern Instruments, Malvern, UK). The crystal structures were examined by X-ray powder diffraction (XRD), where the scans were performed with a Rigaku MiniFlex II powder diffractometer (Rigaku Corporation, Tokyo, Japan) using Cu Kα radiation. A scanning rate of 2° min−1 in the 20°–80° 2θ range was used. Finally, the optical properties of the obtained AuNPs and AgNPs were studied using an Ocean Optics 355 DH-2000-BAL ultraviolet-visible (UV-VIS) spectrophotometer (Halma PLC, Largo, FL, USA) in a 10-mm path length quartz cuvette. The absorbance spectra of nanoparticles were recorded within the range of 300–800 nm.
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9

Electron Tomography of Cell Sections

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For electron tomography, cells were prepared as described in the previous section, except that 150–250 nm sections were cut on a Leica UCT ultramicrotome (Leica Microsystems). After collecting the sections on a 50 mesh Cu/Pd grid (Gilder Grids), previously coated with a supporting film of formvar, the section was covered on both sides with 10 nm gold (Aurion) by incubating the grid in a drop of concentrated gold solution for 3 min. Baking for 30 min was performed before collecting the tilt series to avoid shrinkage of the sample. Tilt series were acquired at a Tecnai G2 20 microscope (FEI) equipped with an Eagle 4k HS CCD camera (FEI) and operated at 200 kV. Dual axis tilt series were collected with a maximum tilting range from −60° to +64° at 1° increments. For data acquisition, processing and modelling, the IMOD software80 (link) from the Boulder Laboratory for 3D Electron Microscopy of Cells was used.
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10

Comprehensive Transmission Electron Microscopy of LEVs

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Bio-TEM images were obtained as previously described [4 (link)]. In brief, density-purified LEVs were applied to 400-mesh copper grids and negatively stained with 2% uranyl acetate. Electron micrographs were recorded with a Tecnai G2 20 microscope (FEI, Hillsboro, OR) at an acceleration voltage of 200 kV. For cryo-EM analysis, 3 µL of LEVs was added to both sides of a Quantifoil TEM grid with a hole diameter of 1.2 μm and an inter-hole distance of 1.3 μm. The TEM grid was blotted for 1.5 s and plunged into liquid ethane using a Cryoplunge 2 system (Gatan, Pleasanton, CA). The cryo-TEM samples were stored in liquid nitrogen before TEM observation. The samples were examined under a Tecnai F20 electron microscope (FEI) operated at 120 kV.
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