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8 protocols using ab10241

1

Exosomal Protein Expression Analysis

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Protein expression was evaluated by WB analysis. The protein concentration was determined using by BCA protein assay kit (Thermo Scientific). The proteins from lysed exosomes (15 μg per group) were then separated by sodium dodecyl sulfate polyacrylamide (10%) gel electrophoresis according to standard methods. The proteins were electrophoretically transferred to nitrocellulose filter membrane and blocked for 60 min with 5% non-fat dried milk in Tris-buffered saline plus 0.5% Tween. The membranes were then incubated overnight at 4°C with primary antibodies for the detection of the following: human ALIX (ab186429, Abcam; 1:1,000), human ALB (ab10241, Abcam; 1:1,000) and CD63 (sc-15363, Santa Cruz; 1:200), N-cadherin (#13116, CST; 1:1,000), GSK3β (ab68476, Abcam; 1:1,000), Slug (#9585, CST; 1:1000), MMP9(ab137867, Abcam; 1:1000), NF-κB (ab76302, Abcam; 1:1,000), and β-actin (GTX124213, GeneTex; 1:100000). Subsequently, the membranes were washed and incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies (diluted at 1:10,000) and protein bands were visualized using electrochemiluminescent (ECL) reagents (Millipore, Bedford, MA).
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2

Protein Extraction and Identification Protocol

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Formaldehyde was purchased from Sinopharm Chemical Reagent Co., Beijing. Ultrapure Tris was purchased from the USB Corporation (Affymetrix, Santa Clara, California, USA). All of the antibodies used were purchased from commercial sources. These antibodies included a mouse monoclonal anti-human serum albumin antibody for immunocytochemistry applications (ab10241, Abcam, Boston, MA, USA) and a peroxidase-conjugated AffiniPure goat anti-mouse IgG (H + L) (ZB-2305, ZSGB-bio, Beijing, China). Protein A + G agarose for co-immunoprecipitation was purchased from the Beyotime Institute of Biotechnology (P2012, Shanghai, China). PBS for washing was obtained from the Cell Culture Center at Peking Union Medical College (Beijing, China).
For protein electrophoresis, 1.5 mm × 10 well 4-12% Bis-Tris gels (NuPAGE, Life Technologies, Carlsbad, California, USA) were used. The 5× SDS loading buffer was obtained from Genestar (Shanghai, China), and the 1851 protein marker was obtained from Fermentas (Waltham, Massachusetts, USA). For trypsin digestion, trypsin gold of mass spectrometry grade was purchased from Promega (Madison, WI, USA). IAA (iodoacetamide) was purchased from GE (Fairfield, Connecticut, USA), and DTT (dithiothreitol) was purchased from Merck (Whitehouse Station, New Jersey, USA). All other regents were of high purity.
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3

SDS-PAGE and Western Blot Analysis

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Proteins (10 μg/lane) were resolved on 12.5% SDS-PAGE at a constant 150V for 2 h. The separated proteins were transferred onto PVDF membranes (Immobilon-P; Millipore, MA, USA) using Trans-Blot SD semidry transfer cell (Bio-Rad). The membranes were blocked in 5% skim milk in PBS for 1 h at room temperature with agitation. After washing, the membranes were probed with antibodies against HSA (ab10241; Abcam Inc., Cambridge, MA) or IgG heavy chain (IgG HC) (P0124, DakoCytomation, Denmark) at dilution 1:1000 in 1% BSA/PBS, 4°C overnight. The membranes were washed to remove excess antibodies and then incubated in secondary antibody conjugated with HRP (at dilution 1:2000 in 1%BSA/PBS) (DakoCytomation, Denmark) at room temperature for 1 h. After washing, the membranes were incubated with enhanced chemiluminescence (ECL) (GE Healthcare), followed by detection with ImageQuant™ LAS 4000 (GE Healthcare).
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4

Immunohistochemistry of Advanced Glycation End-Products

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BP samples are from the ex vivo serum incubation study; rat subcutaneous explants were fixed in formalin (10%, v:v) for 24 to 72 h and embedded in paraffin. Five-µm-thick sections were cut via microtome and mounted on high-adherence glass microscope slides. Antigen retrieval was accomplished by 30 min incubation in 1× sodium citrate buffer (Sigma-Aldrich) at boiling temperature. Anti-AGE (Abcam; #ab23722, 1:5,000 dilution), anti-CML (Abcam #ab27684, 1:1,000 dilution), anti-HSA (Abcam #ab10241, 1:2,000 dilution), and anti-osteopontin (Abcam #ab8448, 1:2,000 dilution) were diluted in DAKO primary antibody diluent (Agilent Technologies, Santa Clara, CA, USA) and applied to sections overnight (16 to 18 h) at 4°C under gentle orbital shaking. DAKO HRP polymer-conjugated anti-rabbit secondary antibodies (Agilent, #ab214880) were applied at room temperature for 1 h. Washes were accomplished using DAKO Wash Buffer (Agilent). IHC stains were developed for 8 min using 3,3′-diaminobenzidine tetrahydrochloride substrate (Abcam), and sections were counterstained for 3 min with Gill’s hematoxylin (Sigma-Aldrich). Slides were mounted using Permount mounting medium (Fisher Scientific) and visualized by 5× light microscopy.
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5

Immunofluorescent Profiling of Hepatocyte Markers

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The imHCs were cultured onto 96-well CellCarrier-96 optic black plates (PerkinElmer, Waltham, MA, USA) and stained with antibodies against hepatocyte markers: Albumin (ALB) (1:100 dilution, ab10241, Abcam), α-fetoprotein (AFP) (1:100 dilution, SC8399, Santa Cruz Biotech, Dallas, TX, USA), LDLR (1:100 dilution, SC373830, Santa Cruz Biotechnology), sodium taurocholate cotransporting polypeptide (NTCP) (1:100 dilution, ab131084, Abcam), MRP2 (1:100, AB3373, Abcam) and hepatocyte nuclear factor-4α (HNF-4α) (1:100 dilution, SC6556, Santa Cruz Biotech). For detecting HBV infectivity, infected hepatocytes were stained with antibodies against HBV proteins: HBcAg (1:100 dilution, ab8637, Abcam), HBsAg (1:100 dilution, ab20758, Abcam). Hepatocytes were then incubated with goat anti-mouse Alexa Fluor® 488-conjugated (1:500 dilution, Invitrogen, Thermo Fisher Scientific, Waltham, MA, USA), goat anti-rabbit Alexa Fluor® 488-conjugated (1:500 dilution, Invitrogen), or donkey anti-goat Cy3-conjugated secondary antibody (1:500 dilution, BioLegend, San Diego, CA, USA). Hepatocyte nuclei were stained with 2 µM Hoechst 33342 (Thermo Fisher Scientific, MA). Mouse IgG2a, mouse IgG1, rabbit IgG and goat IgG were used as negative control for staining. Fluorescence images were captured by an Operetta High-Content Imaging System (PerkinElmer, MA) with a 40× objective lens.
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6

Protein Profiling of Human Serum

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Protein samples were prepared from human serum (DS and age-matched controls, n = 20). Twenty μg protein samples were separated on 4–12% Nu-PAGE Bis-tris (Bis (2-hydroxyethyl)-amino-tris (hydroxymethyl)-methane) gradient gels and transferred to 0.2 μm pore size PVDF for Aβ42, hepcidin and S100β, and 0.45 μm pore size PVDF membranes for SOD1, FTL, FPN, TREM2 and albumin using the NuPAGE electrophoresis system (Invitrogen). Membranes were incubated with different antibodies, i.e., anti-β amyloid (Covance, SIG 39320), SOD1 (Abcam, Cambridge, UK, ab252426), S100β (Abcam, ab218514), anti-ferritin light chain (FTL, Abcam, ab69090), anti-FPN (Abcam, ab85370), anti-hepcidin 25 (Abcam, ab30760), anti-TREM2 (Abcam, ab86491) and anti-albumin (Abcam, ab10241) antibody, in blocking buffer for 24 h at 4 °C, and then washed three times with 0.1 M Tris saline buffer containing 1% Tween 20 (TBST), followed by incubation for 1 h at RT with HRP-conjugated secondary antibodies, anti-rabbit IgG (1:3000, DAKO) or anti-mouse IgG (1:3000; DAKO) antibodies. Binding was detected with ECL Plus chemiluminescence reagents.
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7

Immunofluorescence Staining of Scaffold Cells

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In order to observe specific markers and morphological changes of the embedded cells in scaffolds, immunofluorescence staining was performed. At given time points, cell-laden scaffolds were collected, fixed with 4% formaldehyde, washed in HBSS, permeabilized with 1% Triton X100 and then blocked with 3% bovine serum albumin (BSA). For specific biomarker staining, different antibodies were applied: mouse Anti-Human Serum Albumin antibody (ab10241; Abcam, Germany, dilution 1:2000) labeled with AlexaFluor 568-tagged goat anti-mouse secondary antibody (ab175473; Abcam), mouse Anti-Human Cytokeratin 19 monoclonal antibody (ThermoFisher scientific, Germany, dilution 1:500) detected via AlexaFluor 568-tagged goat anti-mouse secondary antibody, rabbit Anti-Human α1 antitrypsin polyclonal antibody (ThermoFisher scientific, Germany, dilution 1:250) detected via AlexaFlour 488 goat anti-rabbit secondary antibody (ThermoFisher scientific). Cell nuclei were stained with DAPI and cytoskeletons with Phalloidin-iFluor 488 Reagent. Expression of cell surface markers and morphology was observed with a Leica TCS SP5 cLSM.
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8

Immunohistochemical Analysis of Liver Cells

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The paraffin-embedded sections were deparaffinized and rehydrated. Citrate buffer (Dako, Agilent Technologies Japan, Ltd) was used to extract the antigens from each segment for 15 min at 120°C. The sections were blocked with 1% bovine serum albumin (Sigma-Aldrich Co.) and treated with a primary antibody solution at 4°C overnight. The primary antibodies and dilutions were as follows: anti-CK8/18 (P05786, Progen Bio), anti-human albumin (ab10241, Abcam), anti-claudin-1 (Cell Signaling Technology, 13255), anti-E-cadherin (ab76055, Abcam), anti-collagen IV (ab6586, Abcam), anti-HNF 4α (3113S, CST), ani-Pcam1 (ab182931, Abcam), anti-human mitochondria (Merck, MAB1273), anti-DPP IV (Cell Signaling Technology, 40134S), anti-ZO-1 (Invitrogen, 33-9100), anti-integrin (Abcam, ab52971), and laminin (ab11575, Abcam).
After rinsing, the sections were mounted with DAPI (4′,6-diamidino-2-phenylindole) and ProLong Diamond Antifade Mountant (Invitrogen Inc, Carlsbad, CA, USA). The slides were imaged using a BZ-X810 microscope (KEYENCE Co., Osaka, Japan). Claudin-1- or Pcam1-positive areas were counted using ImageJ. Three samples were randomly chosen and claudin-1- or Pcam1-positive area were counted under the same conditions (range, threshold).
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