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Sybr green

Manufactured by BioTeke
Sourced in China, Japan

SYBR Green is a fluorescent dye used in molecular biology applications to detect and quantify DNA. It binds to double-stranded DNA and emits a bright green fluorescent signal when excited by a specific wavelength of light. SYBR Green is commonly used in real-time PCR (polymerase chain reaction) assays to monitor the amplification of DNA during the reaction.

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28 protocols using sybr green

1

Quantifying mRNA Expression of HSP110 and YAP

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To investigate the mRNA expression of HSP110 and YAP, the total RNA was isolated from tissues and cultured HPASMCs according to the RNApure total RNA fast isolation kit (Bioteke, China) according to the manufacturer’s protocols. Then cDNA was generated using reverse transcriptase M-MLV (Takara, Japan). RT-PCR was performed using the SYBR green (Bioteke). The expressions of HSP110 and YAP were quantified using β-actin as an internal control. The PCR primers as following: human HSP110: sense 5′- ATAGGCCGCTTTGTAGT -3′, anti-sense 5′- CCATAGATGCCGTAGAG -3′, human YAP: sense 5′- AAGGCTTGACCCTCGTTT -3′, anti-sense 5′- TTGCTGTGCTGGGATTGA -3′, human β-actin: sense 5′- GGCACCCAGCACAATGAA -3′, anti-sense 5′- TAGAAGCATTTGCGGTGG -3′, mouse HSP110: sense 5′- AATGGTGGCGTGGGAATA -3′, anti-sense 5′- GGATGGGACTGAGATGAC -3′, mouse β-actin: sense 5′- CTGTGCCCATCTACGAGGGCTAT -3′, anti-sense 5′- TTTGATGTCACGCACGATTTCC -3′.
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2

Quantification of miR-638 Expression

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Total RNA from OVCAR-3 and Caov-3 cells was extracted with Total RNA Isolating kit (BioTeke Corporation) following the manufacturer's protocols. Complementary DNA was obtained by RT using M-MLV reverse transcriptase kit (Takara Biotechnology Co., Ltd.) and RT Primer (GenScript) according to the manufacturer's protocol. The relative expression level of miR-638 was determined by qPCR amplification using TaKaRa Taq™ HS Perfect Mix (Takara Biotechnology Co., Ltd.) with SYBR Green (BioTeke Corporation). The thermocycling conditions consisted of: Pre-denaturation at 94˚C for 30 sec, followed by 40 cycles at 94˚C for 5 sec and 60˚C for 15 sec. miR-638 expression was normalized against the expression of U6. The relative expression level of miR-638 was converted to fold changes according to the 2-ΔΔCq method (24 (link)). The primers used were as follows: miR-638 forward, 5'-AATAGGGATCGCGGGCGG-3' and reverse, 5'-GCAGGGTCCGAGGTATTC-3', and U6 forward, 5'-GCTTCGGCAGCACATATACT-3' and reverse, 5'-GTGCAGGGTCCGAGGTATTC-3'.
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3

Real-Time PCR Analysis of δ-Catenin Expression

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Total RNA was isolated from RCC cells using total RNA rapid extraction kit (BioTeke, RP1201) according to the manufacturer's protocol. The obtained RNA was reverse transcribed into cDNA by M‐MLV (Takara, 2641A). The cDNA was used to perform real‐time PCR with Taq HS Perfect Mix (Takara, R300A) and SYBR Green (BioTeke, EP1602). The data were determined by Exicycler™ 96 (Bioneer, Daejeon, Korea), calculated by 2−∆∆Ct parameters. Sequences of real‐time PCR primers were as follows: δ‐Catenin: forward: 5ʹ‐TCTGAGAAACCTGGTGTATGG‐3ʹ, reverse: 5ʹ‐CAGTCGTCTTGCGGAGTAA‐3ʹ, β‐actin: forward: 5ʹ‐CCACTGCCGCATCCTCTT‐3ʹ, reverse: 5ʹ‐GGTCTTTACGGATGTCAACG‐3ʹ.
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4

Quantifying miR-377-3p and NRP2 Expression

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Total RNA was extracted from aortas and human VSMCs using RNApure total RNA fast isolation kits (BioTeke, Beijing, China) according to the manufacturer’s protocols. The concentration of total RNA was quantified by a spectrophotometer (Thermo Fisher Scientific). Reverse transcription was performed to synthesize cDNA using reverse transcriptase M-MLV (Takara, Otsu, Japan) and oligo (dT)15 and random primers or specific miRNA RT primers. The quantitative real-time polymerase chain reaction (qRT-PCR) of miR-377-3p and NRP2 was performed with SYBR Green (BioTeke) and Taq HS Perfect Mix (Takara). U19 and β-actin were used to normalize miR-377-3p and NRP2 expression, respectively. The relative levels were presented as 2−ΔΔCt. The primer sequences used in the present study were listed in Table 1.
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5

Quantification of Gene Expression in Ovary and Skeletal Muscle

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Total RNA was extracted from ovary or skeletal muscle tissues using a RNApure total RNA isolation kit (Bio Teke, Beijing, China). The concentration of RNA was detected on an ultraviolet spectrophotometer (Nana Drop 2000, Thermo Scientific, USA). Subsequently, cDNA was synthesized using M-MLV Reverse Transcriptase (Takara, Japan). Real time PCR was carried out using Taq HS Perfect Mix (Takara) and SYBR Green (Bio Teke) on an Exicycler™ 96 Real-Time Quantitative Thermal Block (BIONEER, Korea). The primer sequences are presented in Table 1. The mRNA expression level was calculated by 2-△△CT method.

Oligonucleotide primer sets for real-time PCR

NameSequence (5′¬3′)Length
CYP17 FTGGAGGTGATAAAGGGTT18
CYP17 RCGTCAGGCTGGAGATAGA18
CYP19 FGCCTGTCGTGGACTTGGT18
CYP19 RTAAATTCATTGGGCTTGG18
PPARγ FTACCACGGTTGATTTCTC18
PPARγ RAATAATAAGGCGGGGACG18
PGC-1α FGAACAAGACTATTGAGCGAACC22
PGC-1α RGAGTGGCTGCCTTGGGTA18
β-actin FCCACTGCCGCATCCTCTT18
β-actin RGGTCTTTACGGATGTCAACG20
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6

Gene Expression Analysis of Metabolic Regulators

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The total RNA was extracted with RNApure extraction kit (BioTeke, Beijing, China), and the concentration was measured with NANO 2000 ultraviolet spectrophotometer (Thermo Scientific, Waltham, MA, USA). The RNA was reversely transcribed into cDNA with M-MLV reverse transcription (TAKARA, Japan) with Oligo(dT) and random primer. The instruments and reagents used in reverse transcription were RNase-free. The cDNA was used for real-time PCR with Taq HS Perfect Mix (TAKARA) and SYBR Green (BioTeke) to detect the mRNA levels of ANGPTL8, tumor necrosis factor-α (TNF-α), interleukin (IL)-1β and IL-6. β-actin served as the internal control. The PCR procedure was set as follow: 94°C for 5 min 20 s, 60°C for 30 s, 72°C for 40 s, and 40 cycles of 72°C for 5 min 30 s, 40°C for 4 min 30 s, melting 60-90°C every 1°C for 1 s, and incubated at 25°C for several minutes. The PCR ran in Exicycler TM96 quantitative thermal block. The data were calculated using 2-ΔΔCt method. The primers were purchased from Genscript (Nanjing, Jiangsu, China), and the information was shown in Table 1.
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7

Quantification of RNA Expression in Renal Tissues

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Total RNA was isolated from renal tissues using a Total RNA Isolation kit (cat. no. RP1001; BioTeke Corporation, Beijing, China). RT was carried out using Super M-MLV Reverse Transcriptase with buffer (cat. no. PR6502; BioTeke Corporation), oligo (dT)15 primers (cat. no. C1101-20; Promega Corporation, Madison, WI, USA), dNTP (cat. no. PR3001, BioTeke Corporation) at 25°C for 10 min, 42°C for 50 min, and then 80°C for 10 min. qPCR was performed on an Exicycler 96 Real-Time Quantitative Thermal Block (Bioneer Corporation, Daejeon, Korea) using the 2X Power Taq PCR Master mix (cat. no. PR1702; BioTeke Corporation) and SYBR Green (cat. no. SY1020; Beijing Solarbio Science & Technology Co., Ltd.). The following primers were used: Collagen I (forward, 5′-GGACGCCATCAAGGTCTACT-3′ and reverse, 5′-GAATCCATCGGTCATGCTCT-3′); TSP-1 (forward, 5′-GACCAGAGGGACACGGACAT-3′ and reverse, 5′-TGGCATTAGGCACATAGGGA-3′); VEGF-A (forward, 5′-CGTGAGCCCTCCCCCTTG-3′ and reverse, 5′-GCCCAGAAGTTGGACGAAAA-3′); and β-actin (forward, 5′-CTGTGCCCATCTACGAGGGCTAT-3′ and reverse, 5′-TTTGATGTCACGCACGATTTCC-3′). The thermocycling conditions were as follows: Denaturation for 5 min at 95°C, followed by 40 cycles of 10 sec at 94°C, 20 sec at 60°C and 30 sec at 72°C. The relative mRNA levels were calculated using the 2−ΔΔCq method (29 (link)).
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8

Quantification of miR-183-5p and PTEN mRNA

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Total RNA was extracted from the ischemic penumbra or N2A cells using the RNApure kit (BioTeke Corporation) according to the manufacturer's instructions. To determine miR-183-5p or PTEN mRNA expression, reverse transcription was performed using M-MLV Reverse Transcriptase (2641A, Takara Biotechnology Co., Ltd.) according to the manufacturer's directions. Real-time PCR was subsequently conducted using Taq™ HS Perfect Mix (Takara Biotechnology Co., Ltd.) and SYBR® Green (BioTeke Corporation). The forward and reverse primers of miR-183-5p, U19, PTEN and β-actin used for real-time PCR were as follows: miR-183-5p, 5′-GCGGCTATGGCACTGGTAGAA-3′ and 5′-GTGCAGGGTCCGAGGTATTC-3′; U19, 5′-TGTGGAGTTGGTCCTGGTCT-3′ and 5′-GTGCAGGGTCCGAGGTATTC-3′; PTEN, 5′-GACCATAACCCACCACAGC-3′ and 5′-CATTACACCAGTCCGTCCCT-3′; β-actin, 5′-AATCGTGCGTGACATCAA-3′ and 5′-AGAAGGAAGGCTGGAAAA-3′. Relative miR-183-5p was calculated using the 2−ΔΔCq method (24 (link)) and normalized to U19. Relative PTEN expression was calculated using the same method and normalized to β-actin.
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9

RNA Isolation and RT-qPCR Analysis

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Total RNAs were isolated from SMCs through TRIpure reagent (BioTeke, Beijing, China), and then reversely transcribed into cDNA using Reverse Transcriptase M‐MLV (Takara, Dalian, China) in the presence of random hexamers and oligo (dT). RT‐qPCR was performed by using SYBR Green (BioTeke) and the primer sequences were listed in Table S1. The 2−ΔΔct method was used to determine relative gene expression.
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10

RT-qPCR Analysis of mRNA Expression

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The messenger ribonucleic acid (mRNA) expression levels were measured via RT-qPCR using the 2× Power Taq PCR Master Mix (BioTeke, Beijing, China) and SYBR Green (BioTeke, Beijing, China) and an ExicyclerTM 96 fluorescence quantitative analyzer. Total RNAs were extracted from myocardial tissues using TRIzol (Invitrogen) and reversely transcribed and synthesized into complementary deoxyribonucleic acids (cDNAs). Then, the concentration and purity of RNAs were detected using Thermo NanoDrop 2000. The synthesis of cDNAs was conducted using 1 μg of total RNAs, reverse transcriptase (Fermentas), and Oligo-dT primers. In PCR amplification, a 50 μL of PCR system was utilized, which contained a reaction buffer, Taq DNA polymerase, dNTPs, 1 μL of forward primer, 1 μL of reverse primer, and 3 μL of template cDNAs (resulting products of reverse transcription reaction). The samples were loaded, shaken for blending, and transiently centrifuged, followed by amplification using a PCR instrument. The recommended reaction conditions are as follows: denaturation at 94°C for 20 s, annealing at 55°C for 30 s, extension at 72°C for 30 s, 30 cycles, and extension at 72°C for 30 s. PCR was performed using an 7900 QPCR system (Applied Biosystems), with the following cycle parameters: 95°C for 5 min, 1 cycle, and 95°C for 10 s and 60°C for 20 s, 40 cycles. The sequences are shown in Table 1.
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