The largest database of trusted experimental protocols

30 protocols using es 20

1

Bacillus subtilis MSCL 897 Seed Culture Preparation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Stock cultures of Bacillus subtilis MSCL 897 (Microbial Strain Collection of Latvia), as a cryovial stock, were frozen in 50% glycerol and stored at -27°C. Two methodologies for 100 L bioreactor seed material preparation were investigated:
1. A 2 L Erlenmeyer ask containing 1.5 L of Luria Bertani (LB) medium supplemented with 10 g/L sucrose were inoculated with 1.5 mL of cryovial stock culture and incubated on an orbital shakerincubator (Biosan, ES-20, Latvia) at 37°C for approx. 18 hours at 150 rpm. Culture was then aseptically pumped into the bioreactor. 2. A 250 mL Erlenmeyer ask containing 50 mL of Luria Bertani (LB) medium supplemented with 10 g/L sucrose, was inoculated with 0.5 mL of cryovial culture. The inoculum was incubated in an orbital shaker-incubator (Biosan, ES-20, Latvia) at 37°C, 200 rpm for 24 h (seed material optical density at the end around 8-9). The cells were then used to inoculate four 1 L Erlenmeyer asks, each containing 375 mL of sucrose-supplemented LB medium, resulting in a total inoculum volume of 1.5 L. The asks were then grown for 5-6 hours at 37°C, 220 rpm, until an OD of 2.0-2.5 was reached and used to inoculate the pilot-scale bioreactor.
+ Open protocol
+ Expand
2

Ga3+ Ion Release from GaHAp Paste

Check if the same lab product or an alternative is used in the 5 most similar protocols
The investigation of Ga3+ ion release from GaHAp paste was performed in Dulbecco’s Modified Eagle Medium (DMEM) with 1 g/L glucose (without NaHCO3; Gibco, Thermo fiscer science, Waltham, MA, USA), with the addition of NaHCO3 (99.7%; Sigma-Aldrich, Burlington, MA, USA) and NaN3 (99.5% (as preservative); Sigma-Aldrich, Burlington, MA, USA). Afterwards, the medium was filter-sterilized through a 0.22 μm filter.
Prior to the ion release tests, GaHAp paste was steam-sterilized at 121 °C for 20 min. The sterile paste samples (50 mg of dry mass) were added to 50 mL of DMEM, vortexed and incubated at 37 °C in a table-top environmental shaker–incubator at 70 rpm (ES-20; Biosan, Riga, Latvia). During the first 72 h, the medium was collected by centrifuging the samples at 1610 g for 3 min and was then replaced with 50 mL of fresh DMEM every 24 h. Thereafter, the medium was refreshed every 72 h. The Ga concentration in the eluate was measured using ICP-MS (Agilent 7700X; Santa Clara, CA, USA). Three parallel measurements were performed for each GaHAp paste composition.
+ Open protocol
+ Expand
3

Optimizing Bioactive Compound Extraction

Check if the same lab product or an alternative is used in the 5 most similar protocols
Six replicates of freeze-dried samples of both G. procumbens and C. gynandra were extracted with different concentrations of ethanol/water ratios (0, 20, 50, 70, and 100% ethanol). In general, the dried samples (4 g) were mixed in 250 mL conical flasks with 100 mL of each ethanol ratio. The mixture was then homogenised using a homogeniser (Ultra Turrax, IKA, Germany) at 6000 rpm for 1 min followed by shaking in a shaker (ES-20, Biosan, Latvia) at 220 rpm for 15 min at room temperature. The supernatant was filtered with125 mm diameter filter paper (Advantec, Japan). The extraction procedures were repeated twice. The collected supernatant was concentrated using a rotary evaporator (RII, Buchi, Switzerland) and further freeze-dried (Freezone 6, Labconco, USA) to eliminate any moisture. Prior to bioassay analysis, the crude extracts of 0 and 20% ethanol/water were dissolved in deionised water, whereas the others were dissolved in dimethyl sulfoxide (DMSO).
+ Open protocol
+ Expand
4

MTT Assay for Nanoparticle-Treated MSCs

Check if the same lab product or an alternative is used in the 5 most similar protocols
The MTT assay started 24 h after the medium supplemented with nanoparticles was added to 24 well tissue culture test plates seeded with MSC and has been performed every day during the incubation period (n = 3). The culture medium was replaced by 1 ml of 2.5 mg/ml MTT (Sigma, UK) solution prepared in DMEM/Ham`s F-12 medium (Sigma, UK), followed by two hours incubation at 37 °C with 5% CO2. After incubation, the MTT solution was replaced by 1 ml of 99,8% isopropanol (STANCHEM, Poland). The plates covered with tinfoil have been shaken for 15 min at 100 rpm (ES-20, Biosan), followed by the color change quantification using the plate reader (Synergy H1, BioTek) at 570 nm.
The cell viability was assessed by the formula: Cellviability%=OD570oftestnanoparticlesOD570ofblankOD570ofcontrolOD570ofblankx100%
+ Open protocol
+ Expand
5

Hb Interaction with Potential Food Contaminants

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hemoglobin (Sigma‐Aldrich) was dissolved in 0.1 M phosphate buffer (PB) (pH 7.4) to 30 mg/mL. Each chemical (glycidol, epichlorohydrin, 3‐MCPD, glyceraldehyde, acrylic acid, and 1,2‐propanediol) was dissolved in 0.1 M PB (pH 7.4) to 1000 mM. Hb (15 mg/mL), and each chemical (100 mM) were mixed in PB (pH 7.4) in a total volume of 500 μL and incubated at 37°C for 1–20 days in an orbital shaker‐incubator (ES‐20; Biosan, Riga, Latvia) at 190 rpm (Figure 1a).
+ Open protocol
+ Expand
6

Time-kill Assay of Bacterial Pathogens

Check if the same lab product or an alternative is used in the 5 most similar protocols
Time–kill curves were determined as described in [52 (link)] with some modifications. One colony of each bacterium (Psg CFBP 2214 and Cff CFBP 3418) was pre-cultured in 4 mL of King’s B liquid medium for 12 h at 28 °C and incubated on a shaker ES 20 (Biosan, Riga, Latvia) at 200 rpm. The cells were precipitated via centrifugation and titrated to a concentration of 104 CFU/mL with sterile water. Bacterial titer control was carried out spectrophotometrically according to the OD600 index measured using a Nanodrop One (Thermo Fisher Scientific, Waltham, MA, USA). The cell suspension was then transferred to 1.5 mL sterile test tubes, and preparations were added to concentrations of 1xMBC. After that, the tubes were placed in a Thermomixer C (Eppendorf, Hamburg, Germany) and cultivated at 27 °C and 350 rpm. After 0, 2, 5 and 30 min and 1, 2 and 24 h, 10 µL of the mixture was taken, diluted in sterile SPS buffer, and dispersed on King’s B agarized medium. Colonies were counted after 48 h of cultivation at 28 °C. A suspension without antimicrobial agents was used as a negative control. The experiment was repeated three times.
+ Open protocol
+ Expand
7

Protein Extraction and Digestion Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
One gram of sample
was extracted with 6 mL of an aqueous solution of urea (4 M), ammonium
bicarbonate (0.1 M), and dithiothreitol (0.005 M), as previously reported.39 (link) After 40 min of stirring with a vortex and reciprocating
shaker (Stuart Scientific, Vernon Hills, IL, USA), the samples were
centrifuged (5810R, Eppendorf, Hamburg, Germany) at 3220g for 5 min at 4 °C. One mL of the supernatant was alkylated
by incubation at 50 °C with 25 μL of iodoacetamide (0.5
M) for 20 min. Then, the sample was diluted with 1.64 mL of ammonium
bicarbonate (0.025 M) and added with 200 μL of trypsin (1 mg/mL,
dissolved in HCl 0.001 M, pH 3) and 200 μL of chymotrypsin (1
mg/mL, dissolved in CaCl2 0.002 M, HCl 0.001 M, pH 3).
These amounts correspond to an enzyme concentration of 130.5 μg/mL.
Digestion was carried out overnight (18 h) at 37 °C in an incubator
with an orbital shaker (ES-20, Biosan, Riga, Latvia). At the end of
the digestion, the enzymes were inactivated with 500 μL of 10%
(V/V) formic acid (1 mL for soybean meal). Prior to UHPLC/ESI-MS/MS
analysis, samples were centrifuged at 6708g at 4
°C for 10 min and then filtered through syringe filters (0.45
μm). All the samples were prepared and analyzed in duplicate.
+ Open protocol
+ Expand
8

Liquid PRF and PRF-CLP Preparation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Blood of 3 healthy volunteers with vitamin D levels > 30 ng/mL was collected in 13 mL i-PRF+ tubes (PROCESS FOR PRF, 06000 Nice, France) and immediately placed in a centrifuge (“PRF DUO Quattro”). PRF was obtained by centrifugation at 700 rpm for 5 min (for women) or 6 min (for men). After the centrifugation, the upper layer of liquid PRF (1 mL) from one donor of each tube was transferred into a 50 mL tube, and mixed together for further use.
An amount of 0.5 mL of liquid PRF was used to obtain one PRF sample. To prepare PRF samples with CLP (PRF_CLP), 0.5 mL PRF was added to pre-weighed 0.5 mg CLP with an automatic pipette and mixed well with a spatula. Samples for FTIR and SEM analysis were prepared by incubation (Environmental Shaker-Incubator ES-20, Biosan, Riga, Latvia) at 37 °C for 1, 3 and 7 days and then lyophilized for 72 h. For drug release and cell experiments, coagulated PRF and PRF_CLP samples were used.
Written consent from all of the volunteers for use of their samples in the research studies was obtained. All donors were free of any infectious disease and had no abnormal nicotine or alcohol use. None of the subjects used any anticoagulant drugs. Permission No. 6-2/10/53 of the Research Ethics Committee of Riga Stradins University was obtained for the study.
+ Open protocol
+ Expand
9

Fluorescent Labeling of Erythrocytes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Plasma was removed from the whole blood, and 800 μL of saline was added to the precipitate. Then, the blood sample was centrifuged (1000× g, 5 min) and washed three times. Afterward, it was stored at −80 °C until use. The lysed blood sample (300 µL) was alkalized with 1 M potassium bicarbonate (20 μL), and the internal standard DHP-Val-d7-FTH (10 ppm) was added. FITC (5 mg, 13 μmol) dissolved in N,N-dimethylformamide (30 μL) was added to the mixture, which was then heated at 37 °C for 18 h in orbital shaker-incubator (ES-20; Biosan) with shaking at 190 rpm.
+ Open protocol
+ Expand
10

Indomethacin-Loaded PVA Filament Preparation

Check if the same lab product or an alternative is used in the 5 most similar protocols
PVA commercial filament and PVA filament prepared by HME (3-m long) were soaked in a saturated solution of IND in methanol at 40 °C for 24 h in a shaker-incubator (model ES-20, Biosan, Riga, Latvia). The filaments were then dried in an oven at 60 °C until they reached a steady weight. Finally, the IND-loaded filaments were kept in a desiccator.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!