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10 protocols using du 730 nucleic acid protein analyzer

1

Evaluating Enzymatic Inhibition Potentials

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The α-glucosidase and α-amylase inhibitory activities were measured as explained by Lordan et al. [53 (link)] and Oboh, Ademiluyi, Akinyemi, Henle, Saliu, and Schwarzenbolz [33 (link)] with minor modifications, which both used acarbose as positive control. For α-glucosidase inhibitory assay, appropriately diluted samples and α-glucosidase (0.1 U/mL) were kept at 37 °C for 10 min. Afterwards, pNPG (5 mM) was added and incubated at 37 °C for 20 min. Absorbance was monitored instantly at 405 nm by DU 730 Nucleic Acid/Protein Analyzer (BECKMAN, Kraemer Boulevard Brea, CA, USA). With regards to α-amylase inhibitory assay, diluted samples and α-amylase (1 U/mL) were kept at 37 °C for 10 min, before the addition of 1% starch solution and another incubation at 37 °C for 10 min. Then, dinitrosalicylic acid reagent was added and the mixture was kept in boiling water bath for 5 min to halt the reaction. The mixture was diluted by deionized water and absorbance was measured at 540 nm (DU 730 Nucleic Acid/Protein Analyzer, BECKMAN). Data were both assessed by median inhibition dose (IC50) and presented as mg/mL (mean ± SD, n = 3). The α-glucosidase and α-amylase inhibitory activities were calculated as followed: Inhibition (%) = [1(AsampleAbackground)/Acontrol] × 100  , where Asample  , Abackground and Acontrol are the absorbances of sample, background, and control, respectively.
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2

Isolated Total RNA for qPCR Analysis

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The total RNA from all groups were isolated using TRIzol reagent and (Invitrogen; Thermo Fisher Scientific, Inc., Waltham, MA, USA) according to the protocol of the manufacturer. RNA samples were treated with DNase I (50 U/µl) (Thermo Fisher Scientific, Inc.) prior to analysis. The content and purity of the RNA was assayed with the DU 730 nucleic acid protein analyzer (Beckman Coulter Inc., Brea, CA, USA), and measured between 1.6 and 1.9 at A260/A280 nm. The amount of RNA was estimated from the optical density at 260 nm. The total RNA was then isolated and was used for qPCR analysis. The total RNA was isolated from the PC-3 cells treated with the pcDNA3.1-hERβ plasmid, the plasmid, Lipofectamine® 2000 and medium for 4 h, and reverse-transcribed into complementary (c)DNA. The cDNA was used for TaqMan analysis according to the protocol of the manufacturer. The PCR primers and TaqMan probes for AR, ERα and ERβ were purchased from the Shanghai GenePharma Co., Ltd. GAPDH was used as the internal control for normalization. The quantification cycle (Cq) values were evaluated by the relative standard curve method and normalized using the respective values of the internal control.
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3

Quantifying A. baumannii DNA and Protein Leakage

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To investigate the leakages of intracellular DNA and proteins of A. baumannii 17 triggered by LCEO, an ultraviolet (UV) light spectrophotometer (DU 730 Nucleic Acid/Protein Analyzer; Beckman Coulter, Brea, CA, USA) was used [21 (link)]. A fresh culture of A. baumannii 17 (1 × 106 CFU/mL, TSB cultured) was washed with sterile water twice and then resuspended by sterile water to the same volume. The resuspended A. baumanni from the previous step was divided into 16 test tubes (4 groups and 4 duplicates). The four groups were: Control, 1/8 MIC (0.135 mg/mL of LCEO), 1/4 MIC (0.27 mg/mL of LCEO) and 1/2 MIC (0.54 mg/mL of LCEO). These 16 test tubes were incubated at 37 °C with 250 rpm shaking for 2 h. Afterwards, 16 test tubes were subjected to centrifugation under 5500 rpm for 15 min, and then the supernatant was taken for absorbance detection of OD260nm (DNA absorbance) and OD280nm (protein absorbance). Because citral (the main active component of LCEO) absorbs UV light, three control tubes with the same concentration of LCEO were set for zeroing the OD value before testing, respectively.
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4

Quantifying Total Phenolic Content in Ramie Leaves

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Total phenolic content in ramie leaves were determined using the Folin-Ciocalteu colorimetric method with modification [12] , [13] (link). In brief, standard curve using gallic acid (0.0–600.0 µg/mL) was made. For each analysis, 100 µL of the standard gallic acid solution or extracts sample were added to 0.4 mL of water in each test tube. Folin-Ciocalteu reagent (0.1 mL) was added to the solution and allowed to react for 6 min to ensure that the Folin-Ciocalteu reagent reacted completely with the oxidizable phenolates in the sample. Second, 1 mL of 7% sodium carbonate solution was added to neutralize the reaction, and 0.8 mL of deionized water was added into the test tubes to adjust the final volume to 2.4 mL. The samples were mixed and allowed to stand for 90 min at room temperature. The absorbance was measured at 760 nm after the color was developed by DU 730 Nucleic Acid/Protein Analyzer (BECKMAN, USA). The absorbance values were calculated based on the standard curve of known gallic acid concentrations and expressed as milligram of gallic acid equivalents (GAE) per 100 g fresh weight (FW). Data were reported as mean ± SD for triplicates.
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5

Spectroscopic Analysis of Compounds

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Optical rotations were determined using an MCP200 automatic polarimeter (Anton Paar, Graz, Austria). Ultraviolet spectra were recorded on a DU 730 nucleic acid/protein analyzer (Beckman Coulter, Brea, CA, USA). IR spectra (film) were measured with a Tensor 27 FT-IR spectrometer (Bruker, Ettlingen, Germany). 1D and 2D NMR spectra were recorded on a Bruker AV-600 spectrometer, δ in ppm rel. to TMS, J in Hz. ESIMS were recorded using an 1290-6420 Triple Quadrupole LC-MS spectrometer (Agilent, Santa Clara, CA, USA). HRESIMS were recorded with an Agilent G6230 TOF mass spectrometer. Silica gel (100–200 mesh, 300–400 mesh, Qingdao Marine Chemical Ltd., Qingdao, China), Sephadex LH-20 (GE Healthcare Bio-sciences AB, Uppsala, Sweden), YMC*GEL ODS-A (S-50 μm, 12 nm) (YMC Co., Ltd., Kyoto, Japan), and reversed-phase HPLC (Rohm and Hass Shanghai Chemical Industry Co., Ltd., Shanghai, China) were used for column chromatography. Biological assays were analyzed using a microplate reader (BioTek Synergy H1, BioTek Instruments, Winooski, VT, USA).
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6

Quantifying Total Phenolic Content

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The Folin-Ciocalteu colorimetric method, as described earlier [49 ], with modifications [50 (link)], was used to determine the total phenolic content in the peel and pulp samples. All extracts were diluted with Milli-Q water to get readings falling within the range of the standard curve concentration: 0.0–600.0 µg gallic acid/mL. One hundred microliters of gallic acid solution or extracts were added to 0.4 mL of Milli-Q water in each test tube, followed by the addition of Folin-Ciocalteu reagent (0.1 mL). The solutions were allowed to react for 6 min to ensure the complete and speedy reaction of the Folin-Ciocalteu reagent with oxidizable phenolates in the sample. Then, 1 mL of 7% sodium carbonate solution was added to neutralize the mixture, followed by the addition of 0.8 mL Milli-Q water to adjust the final volume to 2.4 mL. The samples were mixed and allowed to stand for 90 min at room temperature. After color development, absorbance was measured at 760 nm on a DU 730 Nucleic Acid/Protein analyzer (BECKMAN, Inc., Fullerton, CA, USA). Total phenolic contents were calculated based on the standard curve of known gallic acid concentrations, and final values were expressed as milligrams of gallic acid equivalent per 100 grams on a fresh weight basis (mg GAE/100 g FW). Data were presented as the mean ± SD for triplicates analyses.
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7

Total RNA Extraction and Reverse Transcription

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Total cellular RNA was extracted from the tissue samples using an RNeasy Mini kit (Qiagen) according to the manufacturer’s instruction. Purified total RNA was assessed for purity by measuring the absorbance at 260 and 280 nm using the DU730 Nucleic Acid/Protein Analyzer (Beckman Coulter, Inc., Brea, CA, USA), and stored at −80°C prior to analysis. Total RNA was reverse-transcribed using a SuperScript® III First Strand kit (Invitrogen, Carlsbad, CA, USA), according to the manufacturer’s instructions.
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8

UV Spectral Analysis of Purified Fractions

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Purified fractions (0.1 mg/mL) were dissolved in ultrapure water (ultrapure water as the blank). The UV spectra were determined in the range of 200–400 nm using a DU 730 Nucleic Acid/Protein Analyzer (Beckman Coulter Co., Fullerton, California, USA).
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9

Histone Extraction from PBMCs

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Total histone was extracted from PBMCs using the EpiQuik™ total histone extraction kit (Cat. P-3017-96, Epigentek Group Inc., NY, USA) according to the manufacturer's instructions. Briefly, every 1 × 106 cells were lysed with 10 μL lysis buffer, mixed with three volumes of extraction buffer/glycerol solution by vortexing, and incubated on ice for 5 min. After centrifugation at 12,000 rpm for 5 min at 4°C, the supernatant was collected into a 1.5-mL tube, mixed with 100% TCA solution to a final concentration of 25%, and incubated on ice for 30 min to precipitate proteins. The pellet was collected by centrifugation at 12,000 rpm for 10 min at 4°C, washed twice with acetone, and dissolved in 10 μL of water per amount of pellet extracted from 1 × 106 cells. The protein concentration was determined using Beckman Coulter DU 730 Nucleic Acid/Protein Analyzer, and the extracted histone protein samples were aliquoted and stored at −80°C.
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10

Comprehensive Analytical Characterization

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Optical rotations were determined using an Anton Paar MCP200 automatic polarimeter (Graz, Austria). IR spectrum was recorded with a Bruker Tensor 27 FT-IR spectrometer (film). UV detection was carried out with a Beckman Coulter DU 730 nucleic acid/protein analyzer (Brea, CA, USA). CD spectra were acquired on a Biologic MOS-450 spectra polarimeter (Biologic Science, Claix, France). 1D and 2D NMR spectra were recorded on a Bruker AV-600 spectrometer (Faellanden, Switzerland). ESI-MS were recorded on an Agilent 1290-6420 Triple Quadrupole LC-MS spectrometer (Santa Clara, CA, USA). HRESI-MS was measured with an Agilent G6230 TOF mass spectrometer. Biological assays were analyzed using a microplate reader (BioTek Synergy H1, BioTek Instruments, Winooski, VT, USA).
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