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6 protocols using methanol isocratic grade

1

Peroxynitrite Synthesis and Antioxidant Assays

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Chloroform, methanol (isocratic grade) and acetonitrile (LC–MS grade) were purchased from Merck (Darmstadt, Germany). Formic acid (LC–MS grade) and digoxin (internal standard, IS) were purchased from Sigma–Aldrich (St. Louis, MO, USA). Ultrapure water was prepared using a Milli–Q water purification system (Millipore, Milford, CT, USA). Peroxynitrite was synthesized according to the method of Pryor et al. [40 (link)]. DPPH, Trolox®, rosmarinic acid, thiobarbituric acid, Histopaque®–1077 medium, indomethacin, penicillin–streptomycin solution for cell culture and resazurin (In vitro toxicology assay kit, resazurin based, TOX8–1KT) were also purchased from Sigma–Aldrich (St. Louis, MO, USA). COX (human) Inhibitor Screening Assay Kit (Item No. 701230) and COX Colorimetric Inhibitor Screening Assay Kit (Item No. 701050) were from Cayman Chemicals (Ann Arbor, MI, USA). Reagents and cuvettes for cytotoxicity assays were purchased from NanoEnTek Inc. (Seoul, Korea). All other reagents were provided by local or international suppliers (mainly Avantor Performance Materials, Gliwice, Poland).
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2

Reagent Preparation for Biochemical Assays

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Dimethyl sulfoxide (DMSO), trichloroacetic acid (TCA), thiobarbituric acid (TBA), sodium dodecyl sulfate (SDS), ethylenediaminetetraacetic acid (EDTA), 5,5′-dithiobis-(2-nitrobenzoic acid) (DTNB), formic acid (LC–MS grade), quercetin, kaempferol and H2O2 were purchased from Sigma (St. Louis, MO, USA). Methanol (isocratic grade) and acetonitrile (LC–MS grade) were acquired from Merck (Darmstadt, Germany). Other reagents represented analytical grade and were provided by commercial suppliers, including POCh, (Gliwice, Poland), Acros (Poznań, Poland), and Chempur (Piekary Śląskie, Poland).
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3

Phenolic-Rich Plant Extracts Analysis

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Cytochrome c, dimethylsulfoxide (DMSO), thiobarbituric acid (TBA), H2O2, and formic acid (LC-MS grade) were purchased from Sigma (St. Louis, MO., USA). Methanol (isocratic grade) and acetonitrile (LC-MS grade) were acquired from Merck (Darmstadt, Germany). All other reagents represented analytical grade and were provided by commercial suppliers.
A stock solution of A. melanocarpa extract (commercial product, Aronox, by Agropharm Ltd., Poland; batch number 020/2007k) was made in H2O at a concentration of 5 mg/mL, kept frozen, and then used for experiments. Total content of phenolics in the phenolic-rich powder used in this study amounted to 309.6 mg/g of extract, including phenolic acids (isomers of chlorogenic acid), 149.2 mg/g of extract, anthocyanins (anthocyanin glycosides: cyanidin 3-galactoside, cyanidin 3-glucoside, cyanidin 3-arabinoside, and cyanidin 3-xyloside), 110.7 mg/g, and flavonoids (quercetin glycosides), 49.7 mg/g of extract. The HPLC determination of the phenolic-rich extract from berries of A. melanocarpa was described previously [13 (link)–15 (link)].
The grape seed extract was supplied by Bionorica (Germany) with a total content of phenolics equalling 500 mg/g of extract [15 (link)]. A stock solution of grape seed extract was prepared in 50% DMSO.
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4

Vascular Reactivity Assay Protocol

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The drugs used were: acetylcholine (ACh) as chloride, indomethacin (Indo), N(ω)-nitro-l-arginine methyl ester (l-NAME) hydrochloride, noradrenaline (NA) as hydrochloride, sodium nitroprusside (SNP), tricarbonyldichlororuthenium (II) dimer (CORM-2) (Sigma-Aldrich, Schnelldorf, Germany) and pinacidil (Cayman Chemical, Hamburg, Germany). Indomethacin was dissolved in ethanol. NA was dissolved in a mixture of sodium chloride + ascorbic acid (0.9% and 0.01% w/v, respectively). Other drugs were prepared in distilled water. The stock solutions (10 mM) were maintained at −20 °C, and appropriate dilutions were made in Krebs-Henseleit solution (KHS; mM; NaCl 115, CaCl2 2.5, KCl 4.6, KH2PO4 1.2, MgSO4 1.2, NaHCO3 25 and glucose 11.1 at pH 7.4) on the day of the experiment.
Cytochrome c, dimethyl-sulfoxide (DMSO), formic acid, hydrogen peroxide and thiobarbituric acid of LC-MS grade were purchased from Sigma Aldrich (St. Louis, MO, USA). Methanol (isocratic grade) and acetonitrile (LC-MS grade) were acquired from Merck (Darmstadt, Germany). All other reagents were of analytical grade and were provided by commercial suppliers.
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5

Quantitative DMSO-based Oxidative Assay

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Dimethyl sulfoxide (DMSO), thiobarbituric acid (TBA), formic acid (LC-MS grade), and H2O2 were purchased from Sigma-Merck (St. Louis, MO, USA). Methanol (isocratic grade) and acetonitrile (LC-MS grade) were acquired from Merck (Darmstadt, Germany). Other reagents represented analytical grades and were provided by commercial suppliers, including POCh, (Poland), Acros (Poland), and Chempur (Poland).
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6

Characterization of Phenolic-Rich Extracts

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Dimethylsulfoxide (DMSO), thiobarbituric acid (TBA), H2O2, and formic acid (LC-MS grade) were acquired from Sigma-Aldrich (St. Louis, MO., USA). Methanol (isocratic grade) and acetonitrile (LC-MS grade) were purchased from Merck (Darmstadt, Germany). All remaining reagents represented analytical grade and were provided by commercial suppliers.
A stock solution of A. melanocarpa berry extract (commercial product – Aronox® by Agropharm Ltd., Poland; batch No. 020/2007 k) was prepared in H2O at a concentration of 5 mg/mL, then kept frozen and subsequently used for experiments. The total content of phenolics in the phenolic-rich powder used in this study amounted to 309.6 mg/g of extract, including phenolic acids (isomers of chlorogenic acid) – 149.2 mg/g of extract, anthocyanins (anthocyanin glycosides: cyanidin 3-galactoside, cyanidin 3-glucoside, cyanidin 3-arabinoside, cyanidin 3-xyloside) – 110.7 mg/g, and flavonoids (quercetin glycosides) – 49.7 mg/g of extract. The HPLC determination of the phenolic-rich extract from A. melanocarpa berries had been previously described [12 (link)–14 (link)].
The grape seed extract was supplied by Bionorica (Germany) and was characterized by a total content of phenolics equalling 500 mg/g of extract [13 (link)]. A stock solution of grape seed extract was prepared in 50% DMSO.
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