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39 protocols using ab53066

1

IF Staining of TGCT Cells

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For IF staining, cells at 1 × 104 were seeded on sterile glass coverslips for 24 h, fixed in cold absolute methanol, and subjected to staining with antibodies against epithelial cytokeratin (CK)‑19 and pan CK. Specific markers for stromal fibroblasts—α‑SMA and FAP—were used for quality control of the cancer cell purity. CSF1R was evaluated in the obtained TGCT cells. Briefly, cells were permeabilized with 0.2% Triton‑1X PBS and incubated overnight at 4 °C with the following primary antibodies: mouse anti‑human panCK antibody (sc‑8018; Santa Cruz Biotechnology Inc.); mouse anti‑human CK‑19 antibody (Santa Cruz Biotechnology Inc.); mouse anti‑human α‑SMA antibody (Sigma‑Aldrich; Merck KGaA); rabbit anti‑human fibroblast activation protein (FAP) antibody (ab53066; Abcam); and rabbit anti‑human CSF-1R antibody (ab205921; Abcam). The goat anti‑mouse IgG‑Cy3 antibody (#115‑166‑071; Jackson ImmunoResearch Laboratories Inc.) or the donkey anti‑rabbit IgG (H + L) highly cross‑adsorbed secondary antibody Alexa Fluor 488 (21,206; Thermo Fisher Scientific Inc.) was used. The nuclei were stained with Hoechst 33,342 (Invitrogen; Thermo Fisher Scientific Inc.). Fluorescence was captured with a ZEISS LSM 800 confocal laser fluorescence scanning microscope (Axio Observer 7 LSM 800; Zeiss GmbH).
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2

Immunocytochemistry and Immunofluorescence Assay for Pancreatic Cancer Cell Lines

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For ICC, cells were seeded on a glass coverslip and cultured with control medium or CM from MIApaca‐2, BxPC‐3, SW1990 or PANC‐1 for 24 h. Cells were washed and fixed. Triton‐X‐100 was used to permeabilize the cells. After treating with 3% hydrogen peroxide, cells were incubated with antibodies against α‐SMA (ab32575, 1:100) and PDGFR‐α (ab203491, 1:100) from Abcam overnight, and horseradish peroxidase‐linked secondary antibodies for 1 h. Diaminobenzidine (DAB) was used for detection. For IF, cells were treated as in ICC and incubated with antibodies against α‐SMA (ab32575, 1:100), E‐cadherin (ab219332, 1:100), fibroblast activation protein (FAP, ab53066, 1:100) and epithelial cell adhesion molecule (EpCAM) (ab218448, 1:100) from Abcam overnight. The cells were then incubated with the secondary antibodies, Alexa Fluor 488 (A32731, Invitrogen) and Alexa Fluor 594 (A48271, Invitrogen). Subsequently, the coverslips were fixed and imaged.
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3

Immunophenotyping of Ovarian Cancer-Associated Fibroblasts

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Immunocytochemistry of cytokeratin 19 (CK19), α-smooth muscle actin (α-SMA), vimentin (VIM) and fibroblast activation protein (FAP) was performed to verify the purity of OVCAFs and OVNFs. Briefly, cells on sterile glass coverslips were fixed in ice-cold methanol and then incubated overnight at 4°C in a humid chamber with the indicated primary antibodies as follow: 1:200 mouse anti-human CK-19 antibody (sc-6278, Santa Cruz Biotechnology Inc.), 1:500 anti-α-SMA antibody (A5228, Abcam), 1:500 anti-VIM antibody (sc-6260, Santa Cruz Biotechnology Inc.), and 1:500 rabbit anti-human FAP (ab53066, Abcam). After washing out the excess primary antibody, the coverslip was incubated for 3 h at room temperature with the appropriate secondary fluorescent antibody including goat anti-mouse IgG-Cy3 antibody (1:2,000, #115-166-071, Jackson ImmunoResearch Laboratories Inc.) or the goat anti-rabbit IgG-FITC antibody (1:2,000, ab6717, Abcam). Hoechst 33342 solution (Invitrogen; Thermo Fisher Scientific, Inc.) was added to stain the nucleus. Fluorescence was captured using an Inverted microscope model IX71 (Olympus Corporation).
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Histological Evaluation of Excisional Wound Healing

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6 mm excisional wounds were generated as previously described (73 (link)). After 10 days, wounds were prepared for histological evaluation using the following procedure. Excised wounds were fixed by placing them in 4% paraformaldehyde for 24 hours, following fixation the wound was placed in a cassette that allowed for the dehydration of the tissue, followed by clearing of the tissue using xylene (Fisher brand), and finally imbedding the tissue in paraffin wax. Sections (5 μm) of the paraffin block were placed on clear glass slides for further treatment and staining. Staining and probing for Masson’s trichrome, Picrosirius red, Hsp47 (rabbit polyclonal anti-Hsp47 (Abcam ab109117); 1:4000), rabbit polyclonal anti-Fibroblast activating protein (Abcam ab53066); 1:200), and mouse polyclonal anti-type I collagen (Millipore AB765P); 1:1000) were performed by Histo-Scientific Research Laboratories Inc.
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5

Immunofluorescence Analysis of Cell Markers

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Cells were grown on four-well collagen type I-coated culture slides (BD BioCoat). The slides were incubated with fibroblast activation protein (FAP) antibody (ab53066, rabbit polyclonal IgG: diluted 1:100; Abcam), α-SMA antibody (1A4, mouse monoclonal IgG; diluted 1:100; DakoCytomation, Denmark), and E-cadherin antibody (H-108, rabbit polyclonal IgG; diluted 1:100; Santa Cruz Biotechnology, Inc., USA). The secondary antibodies were anti-rabbit IgG antibody conjugated with Alexa Fluor® 488 (ab150073, donkey polyclonal IgG, diluted 1:1000; Abcam) and an anti-mouse IgG antibody conjugated with Alexa Fluor 594® (ab150116, goat polyclonal IgG, diluted 1:1000; Abcam). The slides were observed using an immunofluorescence microscope (BX50/BS-FLA; Olympus, Japan).
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6

Immunohistochemical Analysis of FAP Expression

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All mice were killed after [18F]FAPI-74 PET imaging, and tumour xenografts were removed. Immunohistochemical staining was performed using anti-FAP alpha antibody (ab53066; Abcam, Cambridge, UK), and the Dako EnVision + System—HRP Labelled Polymer Anti-Rabbit (K4003) (DAKO Corp., Glostrup, Denmark). To evaluate toxicity, the kidneys were removed after the mice treated with [177Lu]FAPI-46 and [225Ac]FAPI-46 were sacrificed. The tissues were fixed in 10% neutral buffered formalin solution for paraffin blocks and stained with hematoxylin and eosin (H&E). Tumour blocks in all mice were also stained with H&E.
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7

Immunofluorescence Profiling of TGF-β Pathway

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Immunofluorescence of fixed paraffin-embedded tissue sections, fixed cells and frozen sections of fixed cultures in Matrigel was performed using the following antibodies at the indicated concentrations: phospho-SMAD2 (Cell Signaling #3101, 1:50), phospho-SMAD3 (Cell Signaling #9520, 1:50), TGF-β1 (Santa Cruz Biotechnology #sc146, 1:50), pan-cytokeratin (Sigma-Aldrich #C2562, 1:500), vimentin (Sigma #V5255, 1:200), human specific vimentin [V9] (Abcam #ab8069, 1:100), fibroblast activation protein (FAP) alpha (Abcam #ab53066, 1:200), alpha-smooth muscle actin (α-SMA) Cy3 conjugate (Sigma #C6198, 1:250), collagen I (Novus Biologicals #NB100-92161, 1:100), cleaved caspase-3 (Cell Signaling #9661, 1:200), phospho-histone H3 (Cell Signaling #9701, 1:100), goat anti-mouse IgM μ chain Cy3 conjugate (Jackson ImmunoResearch #115-166-075, 1:200), Alexa 488 anti-mouse, 488 anti-rabbit, 568 anti-rabbit, 647 anti-rabbit secondary antibodies (Molecular Probes A24920, A24922, A21069, A21245, 1:500). Nuclei were stained with DAPI (Vector Laboratories H-1200). Confocal microscopy was performed on a Nikon C1si confocal microscope.
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8

Lung Fibrosis Quantification in Mice

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Following imaging studies, mice were euthanized, and the lungs were inflated and fixed with 10% formalin overnight and then transferred to 70% ethanol for storage. Lung tissue samples were processed by the UWCCC Translational Research Initiatives in Pathology (TRIP) lab using previously reported methods [20 (link)]. Tissues were embedded in paraffin for Masson’s trichrome staining and immunohistochemical (IHC) staining of FAP. IHC was performed with an anti-FAP antibody (ab53066; Abcam) at an antibody dilution of 1:50. Human breast cancer tissue available through the TRIP lab was used as a positive control. Omission of the primary antibody was used for the negative control. Stained slides were imaged using Leica Aperio AT2 digital pathology slide scanner. Ashcroft scoring was performed to quantify the degree of fibrosis of Masson Trichrome’s stained lung tissue samples as previously described [29 (link)].
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9

FAPI-46 Purification and Characterization

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FAPI-46 was provided by SOFIE (Dulles, VA). Anti-FAP antibody was purchase from Abcam (Ab53066). All materials were used as received without further purification.
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10

PSC Response to Pancreatic Cancer CM

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When the cell density of PSCs reached 80%, the medium was replaced with Dulbecco's modified eagle medium (DMEM) containing 5% foetal bovine serum (FBS) in the control group and 50% DMEM containing 10% FBS added with 50% CM from MIApaca‐2, SW1990 or PANC‐1 in the CM group for 24 h. Total protein was extracted and analysed using WB as previously described.16 The antibodies used for WB were PDGFR‐α (ab203491, 1:500), FAP (ab53066, 1:100) and α‐SMA (ab32575, 1:500) from Abcam.
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