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12 protocols using 2 4 amidinophenyl 6 indolecarbamidine dihydrochloride dapi

1

Immunofluorescence Staining of PPAR-γ and NF-κB

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The cells were first washed three times with PBS solution for 1 min and then fixed with 4% paraformaldehyde for 10 min. After being washed with PBS solution three times for 3 min each, the cells were permeabilized in 0.3% Triton X-100 (Sigma, USA) for 10 min and washed with PBS again. The cells were blocked with 5% bovine serum albumin (BSA) in PBS for 30 min and incubated with rabbit anti-mouse PPARγ antibody (diluted 1 : 100) and rabbit anti-mouse NF-κB/p65 antibody (diluted 1 : 100) overnight at 4°C. In the following morning, the slides were washed with PBS solution and incubated with appropriate fluorescein isothiocyanate-conjugated secondary antibody for 1 h. The cells were subsequently washed and incubated with 2-(4-amidinophenyl)-6-indolecarbamidine dihydrochloride (DAPI) (Life Technologies, USA) 3 min for nuclear staining. The slides were finally visualized with LSM710 Carl Zeiss confocal microscope (Carl Zeiss AG, Germany).
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2

Immunofluorescence Staining of Macrophages

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The Isolated macrophages were first washed three times with PBS solution for 5 min and then fixed with 4% paraformaldehyde for 10 min. The cells were then permeabilized in 0.3% Triton X-100 (Sigma, USA) for 10 min and washed with PBS solution. The macrophages were blocked with 5% bovine serum albumin (BSA) in PBS for 1 h at room temperature and incubated with rabbit anti-mouse IL-2 antibody (diluted 1 : 100), rabbit anti-mouse IL-6 antibody (diluted 1 : 100), rabbit anti-mouse TNF-α antibody (diluted 1 : 100), and rabbit anti-mouse IFN-γ antibody (diluted 1 : 100) overnight at 4°C. Next day, the slides were washed with PBS solution again and incubated with appropriate fluorescein isothiocyanate-conjugated secondary antibody for 1 h. The secondary antibody was subsequently washed and the slides were incubated with 2-(4-amidinophenyl)-6-indolecarbamidine dihydrochloride (DAPI) (Life Technologies, USA) 3 min for nuclear staining and finally visualized with LSM710 Carl Zeiss confocal microscope (Carl Zeiss AG, Germany).
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3

Fluorescent Labeling of Borrelia burgdorferi

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B. burgdorferi was cultured to a density of ~106–107 cells/mL, washed two times with PBS and blocked in 1% BSA for 1 h at 4°C. B. burgdorferi was then incubated with rIsC1ql3 at 4°C for 2 h. After fixation in 2% PFA, the spirochetes were probed anti 6X-His monoclonal antibody-conjugated to Alexa Fluor 488 (ThermoFisher, #MA1-21315-488) for 1 h. B. burgdorferi were then stained with 2-(4-amidinophenyl)-6-indolecarbamidine dihydrochloride (DAPI) (Invitrogen, #P36935). After staining, the fluorescence signals were examined with an EVOS FL Auto Cell Imaging System (Thermo Fisher Scientific).
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4

Immunofluorescent Staining of Aortic CD68

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Cross-sections of infrarenal aortas were incubated with rat anti-mouse CD68 antibodies (1:200 dilution, 5 μg/ml) at 4 °C overnight, followed by incubation with Alexa Fluor 555 anti-mouse IgG secondary antibody (1:1000 dilution, 2 μg/ml) at 37 °C for 1 h, while mouse IgG of equal concentration was used at the primary antibody stage as a negative control. Nuclei were counterstained using 2-(4-Amidinophenyl)-6-indolecarbamidine dihydrochloride (DAPI) (1:1000; Invitrogen, Waltham, MA).
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5

In Situ ROS Detection in Skeletal Muscle

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The in situ ROS generation was assessed by dihydroethidium (DHE) staining as we described previously3 (link); 10 μm thick cryostat sections of skeletal muscle tissue were incubated with 10 μmol/L DHE (Beyotime) at 37°C for 45 min in a humidified dark chamber. Cultured L6 cells were washed by PBS and then incubated with 20 μmol/L DHE in serum-free DMEM medium at 37°C for 30 min in a humidified dark chamber. Cell nuclei were stained with 2-(4-amidinophenyl)-6-indolecarbamidine dihydrochloride (DAPI, Invitrogen). A fluorescence microscopy was used to observe and capture the images that were further analyzed by ImageJ software.
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6

Cell Adhesion and Viability Analysis

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At the time point of 24 h hours, the adhesion of co-cultured cells with the material was observed under fluorescence microscopy (Leica DM4000B, Germany). Filamentous actins (F-actins) were stained with rhodamine phalloidin (R-415 kit, Invitrogen, USA) and the nuclei were stained with 2-(4-amidinophenyl)-6-indolecarbamidine dihydrochloride (DAPI; Invitrogen, Basel, Switzerland). The cell viability was evaluated by Live/Dead assay with calcein-AM (Beyotime, China) and propidium iodide (PI; Beyotime, China).
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7

Evaluating Tumor Hypoxia and Vascularization

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Nude mice bearing 4T1 tumors were i.v. injected with HSA or HSA-PTX (200 μg of PTX, 3 mg of HSA). At 24 h post injection, mice were then i.v. injected with pimonidazole hydrochloride (60 mg/kg) (Hypoxyprobe-1 plus kit, Hypoxyprobe Inc). 90 min later, tumors on those mice were then surgically excised for frozen sections. The tumor slices were incubated with mouse anti-pimonidazole antibody (dilution 1:200, Hypoxyprobe Inc.) and Alex 488-conjugated goat anti-mouse secondary antibody (dilution 1:200, Jackson Inc.) following the kits' instructions. The blood vessels were stained by incubation with rat anti-CD31 mouse monoclonal antibody (dilution 1:200, Biolegend) and Rhodamine-conjugated donkey anti-rat secondary antibody (dilution 1:200, Jackson). Cell nuclei were stained with 2-(4-amidinophenyl)-6-indolecarbamidine dihydrochloride (DAPI) (dilution 1:5000, Invitrogen). The images were captured with a confocal fluorescence microscopy (Leica SP5). For HIF-1α staining, mouse anti-HIF-1α monoclonal antibody (Abcam113642, 200 times dilution) was used as the primary antibody, while goat-anti-mouse IgG antibody conjugated with FITC (Biolegend) was used as the secondary antibody.
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8

Fluorescent Labeling of Borrelia burgdorferi

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B. burgdorferi was cultured to a density of ~106–107 cells/mL, washed two times with PBS and blocked in 1% BSA for 1 h at 4°C. B. burgdorferi was then incubated with rIsC1ql3 at 4°C for 2 h. After fixation in 2% PFA, the spirochetes were probed anti 6X-His monoclonal antibody-conjugated to Alexa Fluor 488 (ThermoFisher, #MA1-21315-488) for 1 h. B. burgdorferi were then stained with 2-(4-amidinophenyl)-6-indolecarbamidine dihydrochloride (DAPI) (Invitrogen, #P36935). After staining, the fluorescence signals were examined with an EVOS FL Auto Cell Imaging System (Thermo Fisher Scientific).
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9

Luteolin-mediated Antibacterial Activity Assay

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T. pyogenes cells cultured to the logarithmic phase were diluted to form a bacterial suspension (approximately 1×106 CFU/mL) and mixed with luteolin (final concentration, 1/4 MIC and 1/2 MIC). After incubating on a shaker at 37 ºC and 150 rpm for 12, 24, and 36 h respectively, the bacterial cells were harvested, washed, and resuspended in PBS (pH 7.4) until the OD600nm value reached 0.6. Thereafter, 200 µL of the bacterial suspension was mixed with 600 µL of 2-(4-Amidinophenyl)-6-indolecarbamidine dihydrochloride (DAPI) (Thermo Fisher) staining solution and incubated at room temperature in the dark for 30 min. A 200-µL volume of the bacterial suspension was then placed in a 96-well plate and the fluorescence intensity was determined at 454 nm after excitation at 364 nm. The bacterial cells stained by DAPI were also harvested, washed, and resuspended in PBS (pH 7.4). A 20-µL volume of the bacterial suspension was then used to create slides, which were observed with a fluorescence microscope (LeicaDM1000, Leica).46 (link),47 (link)
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10

PLGA Polymer Materials for Cell Studies

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PLGA‐S‐S‐PLGA (DS‐PLGA) polymer materials (purity, 90%) were purchased from Xi'an Ruixi Biological Technology Co., Ltd. (Xi'an, China). The primary antibodies used in the present study included anti‐BRD4 (1:2000, BETHYL, USA), anti‐c‐Myc (1:1000, CST, USA), anti‐caspase 3 (1:1000, CST, USA), anti‐Cleaved‐caspase 3 (1:1000, CST, USA), anti‐Lamp2 (1:1000, Abcam, USA), and anti‐TTF1 (1:1000, Abcam, USA). DiR (purity > 98%), DiD (purity > 98%), fluorescein isothiocyanate (FITC, purity > 95%), and 2‐(4‐amidinophenyl)‐6‐indolecarbamidine dihydrochloride (DAPI, purity > 98%) were obtained from Thermo Fisher Scientific Inc. (Waltham, USA). The GSH assay kit was provided by Beyotime (Shanghai, China).
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