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2 protocols using tmt 6 10 plex isobaric label reagent

1

Quantitative Proteomic Analysis of Doxorubicin-Induced Cellular Changes

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Doxorubicin (Solarbio, Beijing, China), formaldehyde (Solarbio, Beijing, China), heparin sodium (Solarbio, Beijing, China), acetonitrile (Merck, Germany), formic acid (CNW, Germany), BCA Kit (Solarbio, Shangahi, China), Tris (Sigma, USA), SDS (Bio-Rad, USA), phenylmethylsulfonyl fluoride (Solarbio, Beijing), phosphatase inhibitor (Solarbio, Beijing, China), RIPA buffer (Solarbio, Beijing, China), PTP1B (Abcam, USA), IRS-1, P-IRS, HK2, HIF-1α (Cell Signaling Technology, Inc., USA), Nrf2 (Abcam, USA), NH4HCO3 (Sigma, USA), High pH Reversed-Phase Peptide Fractionation Kit (Pierce, USA), TMT 6/10 plex Isobaric Label Reagent (Thermo, USA) were used.
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2

Protein Extraction and TMT Labeling

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Protein extraction and peptide digestion were performed as described previously 18 (link). Briefly, lung tissues were lysed in RIPA lysis buffer (Keygen Biotech), and the proteins in lysates were concentrated and digested with Trypsin Gold (Promega) for 16 h at 37°C. The digested peptides were desalted with C18 cartridge and dried by vacuum. The peptides were then labeled with TMT6/10plex™ Isobaric Label Reagent (Thermofisher) following the manufacturer's instructions. The labeled peptides were desalted using peptide desalting spin columns (ThermoFisher, 89852).
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