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Reverse transcriptase core kit

Manufactured by Eurogentec
Sourced in Belgium

The Reverse Transcriptase Core kit is a laboratory product designed to facilitate the process of reverse transcription. Reverse transcription is a fundamental technique used to convert RNA into complementary DNA (cDNA) for various molecular biology applications. The kit provides the essential components required for this process, including the reverse transcriptase enzyme and the necessary buffers and reagents.

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42 protocols using reverse transcriptase core kit

1

Quantification of HO-1 Expression in LDL-Treated Cells

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Cells were either treated or not with native LDL or Mox-LDL at a final concentration of 100 μg/mL for 24 hours. Total RNA was extracted from cells using TRIzol total RNA isolation reagent (Roche Applied Science) and reverse-transcribed using Reverse Transcriptase Core Kit (Eurogentec) according to the manufacturer's instructions. qRT-PCR was performed in 96-well plate format using SYBR Green-based detection on a Step-One-Plus machine (Applied Biosystems) with each 20 μL reaction containing ~50 ng cDNA, 0.3 μM sense and antisense primers, and ABsolute qPCR SYBR Green ROX Mix (Thermo Scientific). The plate was sealed and cycled under the following conditions: 95°C for 15 min, 40 cycles of 95°C for 15 s, 60°C for 30 s, and 72°C for 30 s. Each reaction was performed in triplicate and mRNA levels of RPL27 were used for normalization. The relative expression levels of mRNAs were calculated using the comparative ΔΔCt  method. PCR primers used for the quantification of HO-1 and RPL27 were as follows:

HO-1 forward primer 5′-AAGACTGCGTTCCTGCTCAAC-3′;

HO-1 reverse primer 5′-AAAGCCCTACAGCAACTGTCG-3′;

RPL27 forward primer 5′-ATCGCCAAGAGATCAAAGATAA-3′;

RPL27 reverse primer 5′-TCTGAAGACATCCTTATGACG-3′.

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2

miRNA and mRNA Expression Analysis

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TRIzol reagent (Life Technologies) was used to isolate total RNA. Northern blotting was performed as described early (38 (link)). For detection, γ32P-labeled 22-nt miRCURY complementary LNA probes for miR-122/let-7a (Exiqon) or cDNA probe for U6 small nuclear RNA were used. Blots were detected using phosphor imaging by Cyclone Plus Storage Phosphor System (PerkinElmer), and ImageJ was used for quantification. In case of qRT-PCR, miRNA quantification was performed by TaqMan-based miRNA assays (Applied Biosystems) following the manufacturer’s instructions. mRNA qRT-PCR was carried out using Eurogentec Reverse Transcriptase Core Kit as per the manufacturer’s instructions. cDNA was prepared using random nonamers and PCR with gene-specific primers using MESA GREEN pPCRMaster Mix Plus (Eurogentec).
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3

Galanin Receptor Expression in Hippocampus

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At 4, 6, 8, and 14 days after injection of siRNA GAL2 receptor or siRNA GAL1 receptor, 4 animals treated with siRNA GAL2 receptor or siRNA GAL1 receptor were killed by decapitation. Four animals injected with vehicle followed the same process as controls.
The hippocampi of all animals were quickly extracted and frozen until use. Total RNA was isolated from the dorsal hippocampus using RNeasy Lipid Tissue Kit (Qiagen), followed by treatment to remove genomic DNA with Recombinant DNase I (RNase-free) (Takara biotechnology Co., TLD). cDNA was obtained using a Reverse Transcriptase Core kit (Eurogentec). These three steps were performed according to the manufacturer’s instructions.
All PCR were conducted in triplicate using Power SYBR Green PCR Master Mix (Applied Biosystems) in a 7500 RT-PCR system (Applied Biosystems). The primer sequences used in this study are: GAPDH-Forward: 5′-GCTCTCTGCTCCTCCCTGTTC; GAPDH-Reverse: 5′-GAGGCTGGCACTGCACAA; GAL2 RECEPTOR-Forward: 5′-AACAGGAATCCACAGACC; GAL2 RECEPTOR-Reverse: 5′-CCCTTTGGTCCTTTAACAAG; GAL1 RECEPTOR-Forward: 5′-AAAACTGGACAAAACTTAGCC; and GAL1 RECEPTOR-Reverse: 5′-GGATACCTTTGTCTTTGCTC. The data were analyzed using the comparative Ct method and normalized to measures of glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mRNA.
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4

Measuring mRNA Expression in Cell Aggregates

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Messenger RNA was isolated from cell aggregates using the Dynabeads mRNA DIRECT Purification Kit (Thermofisher), according to the manufacturer’s instructions. RNA was retrieved in Tris HCl solution and reverse transcription done using the Reverse Transcriptase Core kit (Eurogentec, Liège, Belgium), according to the manufacturer’s instructions. Gene expression was assessed using real-time PCR (Rotor Gene Q machine, Qiagen, Hilden, Germany) with the primers described in Additional file 1: Table S1. Gene expression was corrected for the reference gene beta-actin and data are expressed as fold change of untreated cells.
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5

Polyadenylated mRNA Quantification Protocol

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Polyadenylated mRNA was isolated from cells using Dynabeads mRNA DIRECT purification kit (Invitrogen, Carlsbad, CA, USA) and reverse transcribed using Reverse Transcriptase Core kit (Eurogentec, Liège, Belgium). Quantitative PCR amplification was done with SsoAdvanced Universal SYBR Green Supermix (BIO-RAD, Hercules, CA, USA) and amplicons quantified using a standard curve. Gene expression was corrected by the reference gene ACTB or the geometric mean of ACTB and VAPA [27 (link)]. Primers are listed in ESM Table 2.
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6

Quantitative PCR of Gene Expression

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RNA was isolated from the liver, adipose tissue and Ter119+ cells (isolated from bone marrow), using Tri-Reagent (Sigma, India), according to the manufacturer's instructions. RNA isolates were subjected to DNase I treatment (Ambion DNA-free kit). RNA integrity was confirmed by denaturing agarose gel electrophoresis. One microgram of RNA was used to synthesize cDNA, using the Reverse Transcriptase Core Kit (Eurogentec, Belgium). Quantitative PCR reactions were carried out in duplicates, using the Takyon qPCR SYBR master mix (Eurogentec, Belgium) and a BioRad Chromo4 real-time PCR machine. The expression levels of genes of interest were normalized to Rpl19, which was used as the reference gene. Sequences of all primers used, and primer validation data are shown in Supplementary Table 1.
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7

NK Cell Isolation and Gene Expression

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NK cells were enriched from splenocytes using biotinylated DX5 antibodies, streptavidin-coated beads and magnetic cell sorting (Milteny). Next, NK cells (CD3-NK1.1+) were sorted to high (>99% purity) on a FACS Aria II (BD Biosciences). RNA was isolated via the Trizol method, and cDNA was generated with a reverse transcriptase core kit (Eurogentec). The expression of mRNA was examined by quantitative PCR analysis with a 7500 Fast Real Time PCR machine. Taqman assays were used to quantify the expression of Ifng (IFN-γ, Mm00485148_m1). The relative mRNA expression was normalized by quantification of Rn18S (18S, Mm03928990_g1) RNA in each sample.
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8

Angiogenesis Gene Expression in LDL-Treated Cells

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Cells were either treated or not with native LDL or Mox-LDL at a final concentration of 100 μg/mL for 24 hours. Total RNA was extracted from cells using TRIzol total RNA isolation reagent (Roche Applied Science) and reverse-transcribed using Reverse Transcriptase Core Kit (Eurogentec) according to the manufacturer's instructions. For expression analysis of 94 preselected genes involved in angiogenesis, Human Angiogenesis 96-well StellARray qPCR array (Lonza Ltd., Switzerland) was used according to manufacturer's instruction with ABsolute qPCR SYBR Green ROX Mix (Thermo Scientific) on an ABI Prism 7900HT sequence detection system (Applied Biosystems). Data were analyzed with Global Pattern Recognition Data Analysis Tool (Bar Harbor Biotechnology, Trenton, ME, USA) using the internal array control housekeeping gene expression for normalization.
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9

qPCR Analysis of Differentially Expressed Genes

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Four of the genes significantly different between F and EF plants on the microarray were analyzed in the RNA of all individual plants by qPCR analysis as described previously [11 (link)]. In brief, cDNA was synthesized with the Reverse Transcriptase Core kit and subjected to SYBR®Green-based real-time PCR using the qPCR core kit (bothta kits: Eurogentec, Seraing, Belgium, http://www.eurogentec.com) and gene specific primers (Supplementary Material: Table S3) on a Stratagene™ Mx3005P® instrument (Agilent Technologies, Santa Clara, CA, USA, http://www.agilent.com).
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10

Cell Death Pathway Analysis in HUH6 Cells

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Total RNA was extracted from HUH6 cells treated with 5 μM CQ or control media for 96 h utilizing RNAeasy Mini Kit (QIAGEN, Valencia, CA, USA) as instructed. Reverse transcription was performed with Reverse transcriptase Core kit (Eurogentec, Seraing, Belgium). RT2 Profiler Cell Death Pathway Finder qPCR array (QIAGEN) was performed as described in the manufacturer's instructions. Geometric mean of B2M, HPRT1, and GAPDH expression served as a reference.
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