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8 protocols using irdye 680lt goat anti mouse igg h l

1

Quantifying RARα and PML-RARα Protein Levels

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RARα and PML-RARα protein levels were detected by western blot analysis. HL-60 cells were grown in 6-well plates and treated with the following conditions for 48 hours: 1) DMSO as vehicle control, 2) 12μM JY-1-106, 3) 200nM SR11253, 4) 12μM JY-1-106 plus 200nM SR11253. After treatments, cells were collected by spinning down at 500xg for 10 minutes. Cell pellets were resuspended in 200μL RIPA buffer with protein inhibitor (cOmplete ULTRA Tablets, Mini, EDTA-free, EASYpack, Roche) and the lysates were centrifuged (17000xg 30 minutes at 4°C). Samples were separated by 4–20% SDS-PAGE and proteins were transferred to Immobilon-FL PVDF membrane (Millipore). Membrane was incubated with Odyssey Blocking Buffer (LI-COR) for 1 hour and then with Rabbit anti RARα antibodies (Biolegend) and β-Actin (8H10D10) Mouse mAb (Cell signaling) for 2 hours at room temperature. The membrane was washed 3 times with TBS-T and then incubated with IRDye 800CW Goat anti-Rabbit IgG (H + L) (LI-COR) and IRDye 680LT Goat anti-Mouse IgG (H + L) (LI-COR) for 1 hour. Images were taken and data were quantified by Odyssey® Fc system from LI-COR.
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2

Sotorasib's Impact on RAS Signaling

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H2122 cells (5 × 105 cells per well) were seeded in 6-well plates. The next day, supernatants were replaced with media containing 100 nmol/L sotorasib or DMSO. After 24-hour incubation, whole-cell lysates were generated in RIPA buffer (50 mmol/L Tris-HCl, pH 7.4, 150 mmol/L NaCl, 2 mmol/L EDTA, 1% NP-40, and 0.1% SDS), supplemented with protease inhibitors (40 μg/mL PMSF, 2 μg/mL antipain, 2 μg/mL pepstatin A, 20 μg/mL leupeptin, and 20 μg/mL aprotinin), and phosphatase inhibitors (10 mmol/L NaF, 1 mmol/L Na3VO4, 10 mmol/L β-glycerophosphate, and 10 mmol/L sodium pyrophosphate). After clarification of debris by centrifugation, samples were quantified by using the Bradford Protein Assay Kit (Thermo Fisher). Total lysate protein (20 μg) was resolved by SDS-PAGE and transferred onto PVDF membranes (MilliporeSigma). Membranes were incubated with appropriate primary and secondary antibodies labeled with IRDye (680 nm) and visualized using an Odyssey CLx Imaging System (LI-COR). Antibodies used here were monoclonal pan-RAS antibody (1:1,000; clone Ab-3, Millipore), mouse monoclonal ERK2 antibody (1:1,000; clone D2, Santa Cruz Biotechnology), and IRDye 680LT Goat anti-Mouse IgG (H + L; 1:10,000; LI-COR).
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3

Sotorasib-Induced RAS/ERK Pathway Analysis

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H2122 cells (5x105 cells per well) were seeded in 6-well plates. Next day, supernatants were replaced with media containing 100 nM sotorasib or DMSO. After a 24 hr incubation, whole cell lysates were generated in RIPA buffer (50 mM Tris-HCl, pH 7.4, 150 mM NaCl, 2 mM EDTA, 1% NP-40, and 0.1% SDS), supplemented with protease inhibitors (40 μg/ml PMSF, 2 μg/ml antipain, 2 μg/ml pepstatin A, 20 μg/ml leupeptin, and 20 μg/ml aprotinin) and phosphatase inhibitors (10 mM NaF, 1 mM Na3VO4, 10 mM β-glycerophosphate, and 10 mM sodium pyrophosphate). After clarification of debris by centrifugation, samples were quantified by using the Bradford Protein Assay Kit (Thermo Fisher). Total lysate protein (20μg) was resolved by SDS-PAGE and transferred onto PVDF membranes (MilliporeSigma). Membranes were incubated with appropriate primary and secondary antibodies labeled with IRDye (680 nm) and visualized by using an Odyssey CLx Imaging System (LI-COR). Antibodies used here were: monoclonal pan-RAS antibody (1:1000) (clone Ab-3, Millipore), mouse monoclonal ERK-2 antibody (1:1000) (clone D2, Santa Cruz Biotechnology), and IRDye® 680LT Goat anti-Mouse IgG (H + L) (1:10000) (Li-Cor).
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4

Western Blot and ELISA Analysis of NF-κB and TNFα

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THP‐1 cells pellets were extracted in RIPA lysis buffer (Beyotime, China) containing protease inhibitor cocktail (Calbiochem, USA). Protein concentrations were determined by a BCA kit (Pierce, USA). Equal amounts of cell extracts were electrophoresed on sodium dodecyl sulfate‐polyacrylamide gels, and then transferred onto polyvinylidene difluoride membranes (Millipore, USA). The membranes were blocked in 5% non‐fat dried milk in TBS‐T at room temperature for 2 hours and incubated with indicated primary antibodies at 4°C overnight. The primary antibodies used in the study were: anti phospho‐NF‐кB (Ser468) (1:1000, #3039, Cell signaling technology, USA), anti‐TNFα (1:1000, MAB610, R&D systems, USA), and anti β‐actin (1:1000, #3700, Cell signaling technology, USA). The membranes were washed three times with TBS‐T for 10 min each time, and then incubated with IRDye‐680LT Goat Anti‐Mouse IgG (H+L) (Li‐Cor, USA) or IRDye‐800CW Goat Anti‐Rabbit IgG (H+L) (Li‐Cor, USA) (1: 10,000 in TBS‐T) at room temperature for 1 hour. After washing in TBS‐T for another three times, the membranes were analyzed by the Odyssey infrared imaging system (Li‐Cor, USA).
Levels of IL‐1β were determined in EC supernatants by an ELISA assay kit (DLB50, R&D Systems, USA) according to the manufacturer's instruction.
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5

Immunoblotting Antibody Detection Protocol

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The following primary antibodies were used for detection by immunoblot: rabbit anti‐mGFP (Rocha et al, 2009), anti‐mRFP (Rocha et al, 2009) and anti‐VPS18 (Abcam #ab178416), as well as mouse anti‐RFP (5F8, Chromotek), anti‐HA (HA.11 (16B12), Covance), anti‐Myc (9E10, Sigma), anti‐GST (2F3) (van Zeijl et al, 2007), anti‐β‐actin (AC‐15, Sigma), anti‐FLAG M2‐PO (Sigma #A8592) and anti‐HA‐PO (Roche #12013819001). The following secondary detection agents were used when applicable: rabbit anti‐mouse‐PO (Dako # P0161), HRP‐Protein A (Invitrogen #10‐1023), IRDye 800CW goat anti‐rabbit IgG (H+L) (Li‐COR #926‐32211), IRDye 800CW goat anti‐mouse IgG (H+L) (Li‐COR #926‐32210), IRDye 680LT goat anti‐rabbit IgG (H+L) (Li‐COR #926‐68021) and IRDye 680LT goat anti‐mouse IgG (H+L) (Li‐COR #926‐68020).
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6

Western Blot Analysis of PARK7 and UCHL1

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The following antibodies were used for detection
of endogenous protein by Western blot analysis in a 1:1000 dilution:
rabbit anti-PARK7 (Abcam, Cat# ab18257) and rabbit anti-UCHL1(Abcam,
Cat# ab27053). Mouse anti-β-actin (Sigma-Aldrich, Cat# A5441)
was used as a loading control in a 1:10,000 dilution for the Western
blot analysis. Secondary IRDye 800CW goat anti-rabbit IgG (H + L)
(Li-COR, Cat# 926-32211, 1:5000) and IRDye 680LT goat anti-mouse IgG
(H + L) (Li-COR, Cat# 926-68020, 1:20,000) were used for detection
using an Odyssey Classic imager (LI-COR).
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7

Protein Detection by Immunoblotting

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The following antibodies
were used for the detection of endogenous protein by immunoblot analysis
in a 1:1000 dilution: rabbit anti-PARK7 (Abcam, Cat# ab18257), rabbit
anti-UCHL1 (Abcam, Cat# ab27053), Mouse anti-β-actin (Sigma-Aldrich,
Cat# A5441) was used as a loading control in a 1:10,000 dilution for
Western blot. Secondary IRDye 800CW goat antirabbit IgG (H + L) (Li-COR,
Cat# 926-32211, 1:5000) and IRDye 680LT goat antimouse IgG (H + L)
(Li-COR, Cat# 926-68020, 1:20,000) were used for detection using the
Odyssey Classic imager (LI-COR).
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8

Quantitative Protein Analysis in Mouse Tissues

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Mouse tissues were lysed in T-PER reagent with a protease inhibitor cocktail (Thermo Scientific). Equal amounts of proteins were fractionated by SDS-PAGE, transferred to polyvinylidene fluoride (PVDF) membranes. Blots were probed overnight at 4°C with the following primary antibodies: rabbit anti-TH (1:4000, Sigma), mouse anti-β-actin (1:2000, Abgent), rabbit anti-GFAP (1:4000, Millipore), mouse anti-GAPDH (1:5000, Santa Cruz). Next, the membranes were incubated for 1 h with IRDye 680LT goat anti-mouse IgG (H+L) (926-68020, Li-Cor, USA) or IRDye 800CW goat anti-rabbit IgG (H+L) (926-32211, Li-Cor, USA) (1:10,000 dilutions in TBST with 0.02% SDS) and protein bands detected by an Odyssey infrared imaging system (Li-Cor, USA). Protein levels were quantified by densitometry using Quantity One 4.5.2 software (Bio-Rad, Hercules, USA).
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