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P0294

Manufactured by Merck Group

P0294 is a laboratory equipment product manufactured by Merck Group. It is designed for use in research and scientific applications. The core function of this product is to facilitate specific tasks or processes within a laboratory environment. Due to the need to maintain an unbiased and factual approach, a more detailed description cannot be provided at this time.

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3 protocols using p0294

1

Coupled Enzyme Assay for APSK and ATPS

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The activity of both enzymes was determined by the production of ADP which was coupled to NADH oxidation via pyruvate kinase and lactate dehydrogenase58 (link). The assays were performed in a final volume of 100 µl 96-well deep-well plates and spectrophotometrically monitored (Omega multimode microplate reader) at 360 nm at 35 °C. KH2PO4 (100 mM) at pH 7.0, supplemented with 1.5 mM MgCl2 and 100 mM KCl, was used as a buffer. For NADH, a molar extinction coefficient of 4,546.7 cm−1 M−1 was experimentally determined for the above-named conditions. To the buffer, 1 mM NADH, 2.5 mM Na2SO4, 1 mM phosphoenolpyruvate (PEP), 2 mM ATP, 2 U inorganic pyrophosphatase (Saccharomyces cerevisiae, 10108987001, Sigma-Aldrich), 1.1 U ml−1 lactate dehydrogenase, 0.8 U ml−1 pyruvate kinase (rabbit muscle, P0294, Sigma-Aldrich) and 0.5 mg ml−1MtAPSK (all final concentrations) were added. The reaction was started by the addition of 0.5 mg ml−1MtATPS. Addition of 0.02 mM Na2MoO4 did not affect activity (0.116 ± 0.027 µmol of oxidized NADH min−1 mg−1), but the addition of 2 mM Na2MoO4 resulted in a decrease (0.068 ± 0.019 µmol of oxidized NADH min−1 mg−1). All assays were performed in triplicates.
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2

Cy3-ATP Regeneration Protocol

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ATP was regenerated using ∼1 unit of rabbit muscle PK (P0294; Sigma-Aldrich) and PEP (concentration equimolar to Cy3-ATP; Fig. 1). PK, PEP, and Cy3-ATP were incubated for at least 60 min on ice.
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3

Coupled Enzymatic Assay for ATPase Activity

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ATP hydrolysis was measured using a coupled enzymatic reaction (Norby 1988 (link)) in which NADH oxidation to NAD+ reduces absorbance at 340 nm (Δε = 6.22 mM−1 cm−1) using a SpectraMax M5 plate reader and a 384-well assay plate (Corning, 3575). A stock ATPase reaction mix (20X) contained 20 μL of a mixture of pyruvate kinase and lactic dehydrogenase from rabbit muscle (P0294, Sigma Aldrich), 10 μL of 200 mM NADH (CAS# 606688), 15 μL of 1 M phosphoenolpyruvate (Sigma Aldrich, 10108294001) in 25 mM HEPES-KOH (pH 7.6), and 25 μL of 200 mM ATP (pH 6.5). For assays, ClpX6 (1 μM) with or without ClpP14 (3 μM) and DHFR-GSYLAALAA (Bell 2020 ) plus MTX (16 μM each) was present in 10 μL of buffer AB [25 mM HEPES pH 7.8, 100 mM KCl, 20 mM MgCl2, 10% glycerol]. After 5 min of incubation at 30 °C with 2 mM ATP, the ATPase assay was initiated by addition of an equal volume of 2X ATPase reaction mix in buffer AB. Final reaction concentrations were: 0.5 μM ClpX6, 1.5 μM ClpP14 (if present), 8 μM DHFR-GSYLAALAA with MTX (if present), ATPase reaction mix (1X) in a total reaction volume of 20 μL.
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