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32 protocols using g actin f actin in vivo assay biochem kit

1

Actin Dynamics Assays in NPCs

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Actin binding and bundling assays were performed according to manufacturer’s recommendations (Cytoskeleton, Inc., BK001). Actin polymerization assays were performed with pyrene actin (Cytoskeleton, Inc., AP05), α-actinin, GST-tagged VCA domain of human WASP protein (#VCG03), and Arp2/3 protein complex from porcine brain (Cytoskeleton, Inc., RP01P) according to manufacturer’s recommendations, with the addition of recombinant αN-catenin. G:F Actin ratios were determined in triplicate from patient-derived NPCs using G-Actin/F-Actin In Vivo Assay Biochem Kit (Cytoskeleton, Inc., BK037). CK-666 and CK-869, block an activating conformational change, binding to different sites28 (link). CK-666 stabilizes the inactive state of the complex, blocking movement of the Arp2 and Arp3 subunits into the activated filament-like (short pitch) conformation, while CK-869 binds to a serendipitous pocket on Arp3 and allosterically destabilizes the short pitch Arp3-Arp2 interface.
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2

Evaluating Cochlear Actin Dynamics

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A G-Actin/F-actin in vivo Assay Biochem Kit (Cytoskeleton Inc., Denver, CO, USA; BK037) was used to evaluate the G-Actin/F-actin ratio of the cochlea. G-actin and F-actin proteins were separated according to the instructions. In brief, the membranous labyrinths of the cochleae were dissected in 0.01 M PBS. Tissues were frozen in liquid nitrogen and ground into a powder. LAS2 buffer (1 ml per 0.1 g of tissue) was added to the sample, then F-actin Enhancing Solution was added to the sample at a volume ratio of 1:100. The tissue was lysed in the mixed solution for 10 min at 37°C, then the lysate was placed in a centrifuge and centrifuged at 2,000 rpm for 5 min to remove impurities after lysis. The supernatants were then pipetted into clearly-labeled ultracentrifuge tubes, and centrifuged at 100,000× g, 37°C for 1 h. The supernatant, which contained G-actin, was separated and the F-actin depolymerization buffer was added to the precipitate. The sample was placed on ice for 1 h, inverting the sample every 15 min, to obtain the G-actin solution produced by the depolymerization of F-actin. Finally, 5× SDS sample buffer was added to each tube, and western blotting was used to evaluate the G-actin/F-actin ratio.
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3

Separation of Actin Populations in Cardiomyocytes

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Monomeric and filamentous actin populations in murine cardiomyocytes were separated by using G-Actin/F-actin In Vivo Assay Biochem Kit (Cytoskeleton, Inc.) according to manufacturer’s recommendations. Briefly, 5 days after plating cells were washed twice with 1×PBS and scraped off from gelatin-coated (2%) 35 mm plates in Lysis and F-actin Stabilization Buffer prewarmed to 37 °C. The solubilized lysates were incubated at 37 °C, 10 min and cell debris was clarified by centrifugation at 350 × g, 5 min. G-actin in the supernatants and F-actin in the pellets were fractionated by ultracentrifugation at 100,000 × g, 37 °C, 1 h. The pellets were solubilized in F-actin Depolymerizing Buffer on ice, 1 h by triturating with pipetting every 15 min. Supernatant and pellet fractions were resolved on SDS–PAGE, and actin in each fraction was detected by immunoblotting.
The lysis conditions were confirmed by treating the cells 4 days after plating with 0.01% DMSO (control), 2 μM Lat A (Invitrogen), or 0.15 μM jasplakinolide (Santa Cruz Biotechnology) overnight, at 37 °C and harvesting the lysates next day as described above.
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4

Analyzing Murine Cardiomyocyte Protein Expression

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Western blotting and immunostaining of left ventricular murine cardiomyocytes was performed as described previously [24 (link), 26 (link)] using antibodies against PKCα (sc-208, Santa Cruz), JP2 (SC-51313, Santa Cruz), GAPDH (2118, Cell Signaling) and α-actinin (A7811, Sigma). Immunofluorescence imaging for α-actinin and JP2 was performed using a confocal microscope (Carl Zeiss LSM 510 MicroImaging) as previously described.[27 (link)] Cellular fractions of G-actin and F-actin were determined by the G-Actin/F-actin In Vivo Assay Biochem Kit (Cytoskeleton, Inc) per the manufacturer’s instructions.
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5

Quantifying Actin Dynamics in Cells

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The G-actin/F-actin In Vivo Assay Biochem Kit (catalog #BK037; Cytoskeleton, Inc., Denver, CO, USA) was used to quantify globular actin (G-actin) and filamentous actin (F-actin). Briefly, the cells were treated with 0.1% dimethyl sulfoxide (DMSO) vehicle control or inoculated with M. catarrhalis (73-OR or 35-OR isolate at an MOI of 10). The cell membrane was disrupted, whereas the G- and F-actins remained stable and were maintained by lysing the cells in the lysis and F-actin stabilization buffer. The lysate was then centrifuged at approximately 1000× g for 5 min at 25 °C. The supernatant was centrifuged again at 100,000× g to separate F-actin (pellet) from soluble G-actin (supernatant). F-actin and G-actin were resolved using 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to an Immun-Blot polyvinylidene fluoride membrane for Western blot analysis with anti-actin Mab (clone 7A8.2.1). The G-actin/F-actin bands were scanned using densitometry, and the ratio of free G-actin to F-actin was calculated.
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6

Actin and Tropomyosin Partitioning

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The partitioning assay was conducted as described previously13 (link), using the G-actin/F-actin In Vivo Assay Biochem Kit (Cytoskeleton) according to manufacturer’s instructions. Samples were subsequently run on a 10% SDS PAGE gel and probed with specific anti-actin and tropomyosin antibodies as described above. Densitometry and ratios were analysed using Fiji and Excel. For partitioning experiments using cells treated with LatA, 5 µM LatA or DMSO (vehicle control) was added for 1 h prior to harvesting.
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7

Quantifying G-actin and F-actin Fractions

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G-actin and F-actin fractions were extracted from HeLa cell lysates by ultracentrifugation at 100,000 rpm using the G-actin/F-actin in vivo assay biochem kit (Cytoskeleton, Inc., BK037) according to the manufacture protocol. The levels of G-actin and F-actin were quantified by Western blotting using the anti-actin antibody provided in the kit.
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8

Actin Fractionation Protocol

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For actin fractionation, we utilized the G-Actin/F-actin In Vivo Assay Biochem Kit (ref: BK037, Cytoskeleton, Inc.). Prior to fractionation, cells were subjected to different conditions, namely transduction with NKCC1 shRNA or Control shRNA and EGF stimulation. Lysis of the cells and actin fractionation were performed according to manufacturer's instructions. F/G fractions were resolved using the NuPAGE 4–12% Bis-Tris gradient gel, immunoblotted using Actin antibody (ref: ab8227, AbCAM). Intensity of the bands from the different fractions where quantified by densitometry using ImageJ.
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9

Quantifying Cellular Actin Dynamics

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The amount of filamentous actin (F-actin) content versus free globular-actin (G-actin) content was determined using G-actin/F-actin in vivo assay Biochem kit (Cytoskeleton, Denver, CO). The samples obtained were analyzed for actin quantification by SDS-PAGE and WB.
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10

G-actin/F-actin Fragmentation Assay

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G-actin/F-actin fragmentation was performed by the G-actin/F-actin in vivo assay biochem kit (Cytoskeleton, Denver, CO) according to the manufacturer instructions.
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