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4 protocols using p lat

1

Comprehensive Immunohistochemistry Profiling

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The antibodies used were: ASCL1 (Abcam, #ab211327), INSM1 (Abcam, #ab170876), E2F7 (Abcam, ab245655), RB1 (Abcam, ab181616), SYP (Santa Cruz, #sc-17750), RCOR1 (Santa Cruz, #sc-376567), CCN1 (Santa Cruz, #sc-374129), CCN2 (Santa Cruz, #sc-365970), YAP/TAZ (Santa Cruz, #sc-101199), P53 (Santa Cruz, #sc-126), E2F1 (Santa Cruz, #sc-251), GAPDH (Santa Cruz, #sc-47724), LATS1 (Cell signaling, #3477), LATS2 (Cell signaling, #5888), p-LATS (Cell signaling, #8654), H3 (Cell signaling, #4499), H3K27ac (Cell signaling, #8173), H3K4me3 (Cell signaling, #9751), VIN (Cell signaling, #13901), Flag (Sigma, #1804),
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2

Investigating Signaling Pathways in Cancer

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Dasatinib, BIBW2992, PD0325091 and Etoposide were purchased from Selleck Chemicals (Houston, TX) and prepared as 20 mM stock solutions in DMSO. Antibodies used included anti-YAP-TAZ, pLats, Lats1, Lats2, pMST1/2, pH2AX, MEK, pMEK(S217/221), ERK, pERK(T202/Y204), pRb, pS6, LC3A/B, ATM, pChk1, Chk1, pChk2, Chk2, pCDC25c, pATRIP, p27, p21, pp38, β-catenin, cyclin D1, survivin, p4EBP1, pSMAD2(S465–467), p70S6K, pCDC2, CDC6, γH2AX, ATR, pDNA-PK(S2056) and DNA-PK, (Cell Signaling Technology, Danvers, MA); BRAF and cyclin E (Santa Cruz, Dallas, TX) and ATM, Flag M2 and β-actin (Sigma-Aldrich, St. Louis, MO); pATM(S1981) (GeneTex, Irvine, CA). Predesigned siRNAs of the target genes were purchased from Dharmacon (Pittsburgh, PA) or Thermo Scientific (Rodckford, IL). pcDNA4-Chk1-Flag and pCMV5-TOPO-3Xflag-TAZ plasmids were purchased from Addgene (Cambridge, MA). WTBRAF plasmid was provided by Dr. W. Kolch (Systems Biology Irland and The Conway Institute, University College Dublin).
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Characterization of Signaling Pathways in Human Myeloma

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Human myeloma IgE (huIgE, Calbiochem, La Jolla, CA) was biotinylated in the NIAID Core Facility. The protein-specific antibodies used in confocal microscopy were: mTOR (10343, IBL, Minneapolis, MN) and rictor (NB100-612, Novus Biologicals, Littleton, CO). The β-actin-specific antibody for immunoblotting was from Cell Signaling Technology (Beverley, MA) and Lyn-specific antibody for immunoblotting from Santa Cruz Biotechnology (Santa Cruz, CA). The conjugated protein-specific antibodies were: fluorophore-conjugated antibodies (Jackson ImmunoResearch Laboratories, Inc., West Grove, PA), horseradish peroxidase-conjugated rabbit IgG (Amersham Biosciences, Piscataway, NJ), and mouse IgG Fc-specific antibody (Sigma-Aldrich). The phosphoprotein-specific antibodies for immunoblotting were: p-mTOR(Ser2448), p-mTOR(Ser2481), p-rictor (Thr1135), p-Akt(Thr308), p-Akt(Ser473), p-LAT(Tyr171), p-S6 ribosomal protein (S6RP) (Ser240/244), p-4E-BP1(Thr37/46), and rictor (Cell Signaling Technology), and p-PLCγ1(Tyr783) (Invitrogen). The blocking donkey serum was from Santa Cruz Biotechnology and Torin1 (37 (link)) was a gift of Dr. Nathanael S. Gray, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA. FITC-conjugated phalloidin and other chemicals and reagents were from Sigma-Aldrich.
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4

Immunoprecipitation and Immunoblotting of T-Cell Signaling Proteins

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Antibodies against the indicated proteins were purchased from Cell Signaling Technology: Lck (Cat. 2752), pSrc (Cat. 2101), pZAP70 (Y319, Cat. 2717), pZAP-70 (Y493, Cat. 2704), ZAP-70 (Cat. 3165), pErk1/2 (Cat. 9101), Erk1/2 (Cat. 4695), GAPDH (Cat. 5174), Calnexin (Cat. 2679), LAT (Cat. 9166), pLAT (Cat. 3581), PLC-γ1 (Cat. 2822), pPLCγ1 (Cat. 2821), SLP-76 (Cat. 70896) and GRB2 (Cat. 3972). Antibodies against pSLP-76 were purchased from Invitrogen, Cat. PA5-39759. The following antibodies were used for immunoprecipitation: anti-Lck clone 3A5 (EMD Millipore, Cat. 05-435) and anti-ZAP-70 clone 35A.2 (EMD Millipore, Cat. 05-253). The following reagents were used: Anti-human CD3 antibody (OKT3) (eBioscience, Cat. 14-0037-82), Pierce Protein A agarose beads (Thermo Scientific, Cat. 20333), Hydroxylamine hydrochloride (Sigma, Cat.159417), Methyl methanethiosulfonate (MMTS) (Sigma, Cat. 208795), n-Dodecyl β-D-maltoside (DDM) (Sigma, Cat. D4641), EZ-Link HPDP-biotin (Thermo Scientific, Cat. 21341), Streptavidin agarose beads (Invitrogen, S951), Poly-L-lysine (Sigma, Cat. P4707), Phosphatase Inhibitor Cocktail 2 (Sigma, Cat. P5726), Complete Protease Inhibitor Cocktail tablets (Roche, Cat. 11836170001) and ML211 (Cayman Chemical, Cat. 17630).
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