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16 protocols using ab227828

1

Immunohistochemical Analysis of ADAR1, Ki-67, Caspase-3, Keap1, and Nrf2

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Tissues were fixed in formalin and embedded in paraffin. Four-μm-thick sections were mounted on poly-l-lysine-coated slides. Afterwards, the slides were dewaxed in xylene and rehydrated with a gradient of ethanol and distilled water. To quench endogenous peroxidase activity, the sections were exposed to 3% hydrogen peroxide for 10 min at room temperature, followed by antigen retrieval. Thereafter, incubation with primary antibodies against ADAR1 (1/100; ab168809; Abcam, USA), Ki-67 (1/100; ab21700; Abcam), Caspase-3 (1/100; ab32499; Abcam), Keap1 (1/200; ab227828; Abcam), and Nrf2 (1/100; ab137550; Abcam) was conducted at 4 °C overnight. Then, the sections were probed with HRP anti-rabbit IgG antibody (1/200; ab288151; Abcam), stained with DAB, and nucleated with hematoxylin, followed by dehydration with a gradient of ethanol and sealing with neutral gum. Protein expression was quantified with ImageJ software.
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2

ADAR1 Immunoprecipitation and Immunoblot Analysis

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Cells were lysed on ice for 4 h, and cell lysate was centrifuged at 13,000 rpm for 10 min. The supernatant was harvested and pre-incubated with immunopure immobilized protein A for removing non-specific proteins binding to the beads. Then, the supernatant was incubated with IgG or ADAR1 antibody (1/1000; ab168809; Abcam) for 1 h, followed by protein A agarose beads with gentle agitation at 4 °C overnight. Immunoblot analysis was conducted by ADAR1 (1/1000; ab168809; Abcam), β-actin (1/5000; ab179467; Abcam), Keap1 (1/2000; ab227828; Abcam) and Nrf2 (1/500; ab137550; Abcam) antibodies.
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3

Western Blot Analysis of Spinal Cord Proteins

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The spinal cord tissues were lysed by RIPA buffer (Thermo Fisher Scientific, Waltham, MA, USA), and the protein concentrations were tested by BCA kit (Beyotime, Shanghai, China). Proteins were isolated by 10% SDS‐PAGE and transferred onto PVDF membranes (Millipore, Billerica, MA, USA), which were then blockaded with 5% skim milk. After that, membranes were cultured with primary antibodies at 4°C overnight. Then, the membranes were rinsed with tris-buffered saline-tween-20 and cultured with the secondary antibody (1:2,000, ab6789; Abcam) for 2 h. The membranes were visualized by enhanced chemiluminescence luminescent liquid (Advansta, Menlo Park, CA, USA). The relative density of protein bands was analyzed by ImageJ (v1.8.0; National Institutes of Health). The primary antibodies used are as follows: NeuN (1:1,000, ab177487; Abcam), GFAP (1:5,000, ab207165; Abcam), Iba-1 (1:500, ab178846; Abcam), heme oxygenase 1 (HO-1; 1:2,000, ab52947; Abcam), Nrf-2 (1:1,000, #12721, Cell Signaling Technology, USA), Kelch-like ECH-associated protein 1 (Keap-1; 1:2,000, ab227828; Abcam), and GAPDH (1:10,000, ab181602; Abcam) served as loading control.
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4

Immunoblotting of Cell Protein Extracts

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Total protein extracts were isolated using RIPA lysis buffer (Sigma, USA), and were quantified with bicinchoninic acid (BCA) kit (Pierce, USA). Afterwards, extracted proteins were separated via SDS/PAGE, and transferred onto PVDF membranes. The membranes were then blocked by TBST supplemented with 5% skimmed milk. Antibodies listed below were utilized for incubating the membranes, comprising ADAR1 (1/1000; ab168809; Abcam), β-actin (1/5000; ab179467; Abcam), Keap1 (1/2000; ab227828; Abcam), and Nrf2 (1/500; ab137550; Abcam), and HRP anti-rabbit IgG antibody (1/2000; ab288151; Abcam).
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5

Western Blot Analysis of Keap1, Nrf2, and HO-1

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HaCaT and PIG1 cells were lysed in RIPA lysis buffer on ice. Equal amounts of protein from each sample were separated using 10% SDS-PAGE and then transferred to polyvinylidene fluoride membranes (Merck Millipore, Billerica, MA, USA). In addition, 5% bovine serum albumin (BSA) (Yeasen, Shanghai, China) was used to block nonspecific binding for 1 h. The membranes were probed with anti-Keap1 (ab227828), anti-Nrf2 (ab62352), anti-HO-1 (ab13248), and anti-β-actin (ab8227) antibodies overnight at 4°C; these primary antibodies were obtained from Abcam (Cambridge, MA, USA). Membranes were then incubated with secondary antibodies, including goat anti-mouse (115-035-003; Jackson ImmunoResearch, PA, USA) and goat anti-rabbit (111-035-003, Jackson ImmunoResearch, PA, USA) antibodies, at room temperature for 1 h. Thereafter, the protein bands were examined using an ECL western blot detection system (Merck Millipore, Burlington, MA, USA). The antibodies used are listed in Supplementary Table 2.
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6

Proteomic Profiling of Neonatal Rat Hippocampus

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Neonatal rat hippocampal tissues were extracted and total protein was obtained using RIPA buffer containing PMSF. The protein concentration was determined using the BCA assay kit (Beyotime, China) on postnatal day 21. Subsequently, the protein loading buffer was added and the samples were denatured at 95°C for 10 min. After that, the proteins were isolated by 10% SDS-polyacrylamide gel electrophoresis and then transferred to an activated PVDF membrane. Following blocking, the membrane was incubated overnight at 4°C with the appropriate concentration of primary antibody. Subsequently, the fluorescently labeled secondary antibody (IRDye700 and IRDye800, goat anti-rabbit) was incubated for 1 h at 37°C. Color rendering was performed using a chemiluminometer (Licor, America). The primary antibodies used were as follows: anti-NeuN (ab177487, abcam), anti-GPX4 (ab125066, abcam), anti-FTH1 (ybs-5907R, YOYOBIO), anti-PTGS2 (ab226869, abcam), anti-ACSL4 (PA5-27137, Invitrogen), anti-Nrf2 (PA5-27882, Invitrogen), and anti-Keap-1(ab227828, abcam).
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7

Quantifying Cardiac Protein Levels

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Total protein extracts were prepared by homogenization of mouse ventricles in Urea lysis buffer. Samples were separated on 4-12% SDS-PAGE gels (Life Technologies) and incubated with primary antibodies, including STK3 (1:1500, #ab52641, Abcam), KEAP1 (1:1500, #ab227828, Abcam), Bax (1:2000, #ab32503, Abcam), Bcl2 (1:1500, #ab182858, Abcam), and Nrf2 (1:1500, #ab92946, Abcam). Immunoreactive protein bands were visualized using ECL reagent. The representative image for each group was selected to show the average or median level of the group based upon the mean value 34 (link).
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8

Western Blot Analysis of Nrf2 Pathway

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Bone tissues and MC3T3-E1 cells were processed for protein extraction using RIPA lysis buffer (Takara Bio, Inc.), and then quantified using a BCA assay kit (Bio-Rad Laboratories, Inc.). In brief, a total of 25 µg protein samples were separated via 10% SDS-PAGE, and separated proteins were then transferred onto PVDF membranes. After blocking with 5% skimmed milk at room temperature for 2 h, the membranes were incubated with primary antibodies against Keap-1 (1:1,000, ab227828, Abcam), CUL3 (1:1,000, ab75851, Abcam), Nrf2 (1:1,000, ab76026, Abcam), and GAPDH (1:2,000, ab8245, Abcam) overnight at 4°C, and the membranes were then washed with PBS and incubated with the appropriate HRP-conjugated secondary antibody (1:5,000; cat. no. 7074; Cell Signaling Technology, Inc.) at room temperature for 2 h. Finally, ECL solution was applied to bands to measure the protein expression levels with Tanon-5200 Chemiluminescence Imager (Tanon Science and Technology Co., Ltd.). The relative intensities of target proteins were analyzed using ImageJ software (version 1.48; National Institutes of Health) and normalized to GAPDH expression.
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9

Keap1-Nrf2-HO-1 Signaling Pathway Evaluation

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The protocol was modified based on publications [25 (link),26 (link)]. Proteins of cells were lysed and collected with RIPA lysis solution. Protein concentration was determined by the BCA method. The protein samples of each group were loaded in equal quantities and transferred to the polyvinylidene fluoride membrane (BD Biosciences, USA) after electrophoresis. The membrane was blocked with QuickBlock™ blocking buffer (Beyotime) at room temperature and incubated overnight with a specific primary antibody for Keap1, Nrf2, HO-1, and β-actin (#ab227828, #ab137550, # ab13243, and #ab115777, Abcam, UK) at 4°C. TBST was used for a full washing, and the corresponding secondary antibody was added and incubated at room temperature for 1 h. After washing, ECL luminescent solution (Millipore, USA) was dropped to visualize protein bands. β-actin served as the internal reference.
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10

Immunohistochemistry for Keap1 Expression

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The IHC was carried out according to standard protocol. In shortly, all paraffin specimens were sliced to a thickness of 4 µm, then deparaffinized and hydrated and heated in Tris/EDTA buffer pH 9.0 for antigen retrieval. The Keap1 antibody (1:500, ab227828, Abcam) was incubated overnight at 4 °C and the specimens were visualized with a light microscope (Olympus, Tokyo, Japan). Two pathologists completed the readings independently. The average number of positive cells in each field was analyzed as the percentage of positive cells in the section and scored using the Fromowitz criteria (Fromowitz et al., 1987 (link)): 0–5% was scored as 0, 6–25% was scored as 1, 25–50% was scored as 2, 51–75% was scored as 3, and >75% was scored as 4. The intensity of staining was scored according to the staining characteristics of most positive cells: 0 score for no staining, 1 score for light yellow, 2 score for brown, and 3 score for dark brown. The final score was derived by summing the percentage of stained cells and the corresponding intensity, with 0–1 being classified as negative (−), 2–3 as weakly positive (+), 4–5 as moderately positive (++), and 6–7 as strongly positive (+++). Where (−) and (+) recorded as low expression, (++) and (+++) recorded as high expression groups.
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