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6 protocols using anti cd44 buv395

1

In Vitro Generation of OVA-Specific Memory CD8+ T Cells

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In Vitro Memory Differentiation Memory OT-I T cells were generated as described previously (Balmer et al., 2016; van der Windt et al., 2013) . Briefly, the lymph nodes from MHC class I-restricted OVA-specific T cell receptor (OT-I) transgenic mice and the spleen of C57BL/6 mice were aseptically removed and incubated in liberase TL (Roche) for 30 min. After mashing through a 70 mm cell strainer (BD Biosciences), red blood cells were lysed with RBC Lysis Buffer Solution (eBioscience). The isolated cell suspensions were washed in RPMI medium (RPMI 1640 containing 10% FCS, 100 U/mL penicillin, 100 mg streptomycin, 0.29 mg/mL L-glutamine, 50 mM 2-Mercaptoethanol (Life Technologies)) and re-suspended to 10 6 cells/mL. The splenocytes and OT-I cells were pooled in a ratio of 1:1 and activated with OVA peptide (Eurogentec) at 10 À9 M at 37 C for 3 days. The cells were then washed and re-suspended to 2 3 10 6 cells/mL and cultured in the presence of IL-15 (10 ng/mL) at 37 C for another 3 days to generate OVA-specific memory CD8 + T cells. Phenotyping was performed using BUV395-anti CD44 (BD), APC-anti CD8, BV421-anti KLRG1, PE-anti-CD62L, APC-Cy7-anti CD43, BV421-anti PDL1, PE-anti-CD25, BV510-anti CD27 (all Biolegend) and PE-Cy5-anti CD127 (eBioscience).
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2

Mouse Foreign-Body Infection Model

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The mouse model of foreign-body infection (John et al., 2011; Nowakowska et al., 2014) was used in the present study. Briefly, a sterile tissue cage (Angst + Pfister AG, Zurich, Switzerland) was implanted subcutaneously in the back of female C57BL/6 mice, 13 weeks old (janvierlab, France). After complete wound healing (2 weeks), cages were tested for sterility by culturing the aspirated tissue cage fluid (TCF). Teflon cages were infected with 785 CFU of MSSA ATCC 29213. The infection was confirmed at day 1 directly before treatment start by plating. Mice were i.p. treated twice a day with 5% glucose for 11 days. Tissue cage fluid (TCF) was aspirated at different time points (day 3, 6, 9, 11 and 14) and apropriate dilutions were plated to determine the amount of planktonic MSSA. Tissue cage fluids were then analyzed for acetate, calcium and phosphate levels and CD8 + T cells isolated by MACS-purification and frozen in Trizol Reagent (Thermo Fisher Scientific). For phenotyping, cells were stained with APC-anti CD8 (Biolegend), BUV395-anti CD44 (BD), PE-anti CD62L (Biolegend) antibodies and Zombie-Red Viability staining (Biolegend).
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3

Cytokine Production by Antigen-Specific T Cells

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Bone marrow‐derived dendritic cells were cultured as described19 in complete RPMI supplemented with X‐63 supernatant for 7 days. A single‐cell suspension was incubated with 10 μg/ml NP311–325 peptide for 2 hours prior to co‐culture with lungs, spleen or lymph node cells in complete RMPI at a ratio of approximately 10 T cells to 1 DC in the presence of Golgi Plug (BD Bioscience). Co‐cultures were incubated at 37°C, 5% CO2 for 6 hours. Cells were incubated with Fc block and surface stained with anti‐CD4 BUV805 (BD Biosciences; clone: RM4‐5) or CD4 APC‐Alexa Fluor 780 (eBioscience; RM4‐5), anti‐CD44 BUV395 (BD Biosciences; clone: IM7) and ‘dump’ antibodies: B220 (clone: RA3‐6B2), CD8 (53‐6.7) and MHC II (clone: M5114) all on eFluor‐450 (eBioscience). Cells were fixed with cytofix/cytoperm (BD Bioscience) for 20 minutes at 4°C and stained in perm/wash buffer with anti‐cytokine antibodies for 1 hour at room temperature (anti‐IFN‐γ PE (XMG1.2), anti‐TNF Alexa Fluor‐488 (MP6‐XT22) anti‐IL‐2 APC (JES6‐5H4) all from eBioscience.
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4

Single-cell Tetramer Staining Protocol

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Single-cell suspensions were stained with PE or APC-labelled IAb/NP311-325 or APC-labelled Db/NP368-374 tetramers (NIH tetramer core) at 37°C, 5% CO2 for 2 h in complete RPMI (RPMI with 10% foetal calf serum, 100 μg/ml penicillin-streptomycin, and 2 mM l-glutamine) containing Fc block (24G2). Surface antibodies were added and the cells were incubated for a further 20 min at 4°C. Antibodies used were: anti-CD3 BV785 (BioLegend; clone: 17A2), anti-CD4 BUV805 (BD Bioscience; clone: RM4-5), anti-CD8 BV421 (ThermoFisher; clone: 53-6.7), anti-CD44 BUV395 (BD; clone: IM7), anti-CD45.2 BV605 (BioLegend; clone: 104), anti-CD69 PE-Cy7 (ThermoFisher; clone: H1.2F3), anti-CD127 APC (ThermoFisher; clone: A7R34), anti- γδ TCR PE-Cy7 (BioLegend; clone: GL3), anti-ICOS BV785 (BioLegend; clone: C398.4A), anti-NK1.1 APC-Cy7 (BioLegend; clone: PK136), anti-PD1 BV711 (BioLegend; clone: 29F,1A12), and ‘dump’ antibodies: B220 (RA3-6B2), F4/80 (BM8), and MHC II (M5114) all on eFluor-450 (ThermoFisher) or PerCP-Cy5.5 (ThermoFisher; B220 and F4/80, and BioLegend; MHCII). Cells were stained with a fixable viability dye eFluor 506 (ThermoFisher). Stained cells were acquired on a BD LSR Fortessa and analysed using FlowJo (version 10, BD Bioscience).
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5

Multiparameter Analysis of Antigen-Specific CD4+ T Cells

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A single‐cell suspension was stained with PE‐labelled IAb/NP311–325 (NIH tetramer core) at 37°C, 5% CO2 for 2 hours in complete RMPI (RPMI with 10% foetal calf serum, 100 μg/ml penicillin‐streptomycin and 2 mM l‐glutamine) containing Fc block (24G2). Surface antibodies were added, and the cells incubated for a further 20 minutes at 4°C. Antibodies used were as follows: anti‐CD4 BUV805 (BD Biosciences; clone: RM4‐5) or CD4 APC‐Alexa Fluor 780 (eBioscience; RM4‐5), anti‐CD44 BUV395 (BD Biosciences; clone: IM7), anti‐CXCR5 BV785 (BioLegend; clone:L138D7), anti‐PD‐1 BV711 (BioLegend: 29F.1A12) and ‘dump’ antibodies: B220 (RA3‐6B2), anti‐CD8 (53‐6.7) and MHC II (M5114) all on eFluor‐450 (eBioscience). Cells were stained with a fixable viability dye eFluor 506 (eBioscience). In some cases, cells were then fixed with FoxP3 Transcription Factor Fixative kit (Thermo Fisher, UK) and stained with anti‐FoxP3 PeCy7 (eBioscience; FJK‐16S), anti‐Bcl2 FITC (Biolegend; Blc/10C4) and anti‐Ki67 BV605 (Biolegend; 16A8). Phosphorylated H3 was detected in cells fixed with 2%PFA/0.5% saponin using Alexa 647‐labelled anti‐Histone H3 (pS28) (HTA28, Thermo Fisher). Cells were acquired on a BD LSR or Fortessa and analysed using FlowJo (version 10 Treestar).
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6

Multiparametric Flow Cytometry

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Single cell suspension were stained with PE-labeled IA b /NP311-325 (NIH tetramer core) at 37°C, 5% CO2 for 2 hours in complete RMPI (RPMI with 10% foetal calf serum, 100µg/ml penicillinstreptomycin and 2mM L-glutamine) containing Fc block (24G2). Surface antibodies were added and the cells incubated for a further 20minutes at 4°C. Antibodies used were: anti-CD4 BUV805 (BD Biosciences; clone: RM4-5) or CD4 APC-Alexa Fluor 780 (eBioscience; RM4-5), anti-CD44 BUV395 (BD Biosciences; clone: IM7), anti-CXCR5 BV785 (BioLegend; clone:L138D7), anti-PD-1 BV711 (BioLegend: 29F.1A12) and 'dump' antibodies: B220 (RA3-
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