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Pol 2 promoter

Manufactured by Thermo Fisher Scientific
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The Pol II promoter is a DNA sequence that serves as a binding site for RNA polymerase II, the enzyme responsible for transcribing protein-coding genes in eukaryotic cells. It plays a crucial role in the initiation of gene expression.

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2 protocols using pol 2 promoter

1

Modulating Smad7 Expression via RNA Interference

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For the loss-of-function studies, transient knockdown of Smad7 gene expression was achieved using pre-validated siRNA (Ambion Life technologies, Grand Island, NY, USA). For the long-term knockdown of Smad7, the pre-validated short hairpin RNA (shRNA) oilgos were cloned into a pcDNA 6.2 miR RNAi expression vector under the control of Pol II promoter (Life Technologies, Grand Island, NY, USA). The RNAi and shRNA plasmid transfections were performed using Lipofectamine3000 (Life technologies corporation, Grand Island, NY, USA) as per the manufacturer’s instructions. Briefly, a transfection solution was prepared by adding 10μl Lipofectamine 3000 in 200 μl of opti-MEM medium to pre-diluted RNAi/plasmid-RNAi in 200 μl of opti-MEM. The mixture was incubated for 10 min at room temperature and added to the HCF in 1.6 ml of a serum-free culture medium. The transfected cells were washed 16 h later and used for the loss-of-function studies.
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2

Vorinostat and Gene Silencing in Corneal Fibroblasts

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A 10 mM stock solution of vorinostat (Cayman Chemical Company, Ann Arbor, MI) was prepared in dimethylsulfoxide (DMSO) and diluted with MEM to achieve a final concentration of 2.5 µM in the culture medium. The equivalent amount of DMSO (0.5 µl in 2 ml culture medium) served as controls. For the knockdown of TGIF1 and TGIF2 gene expression, prevalidated siRNA (Ambion Life technologies, Grand Island, NY) were used at a 30 nM concentration (Table 1). For the knockdown of Smad2/3/4, the prevalidated RNA interference (RNAi) oiligos (Table 1) were cloned into a pcDNA 6.2 miR RNAi expression vector under the control of Pol II promoter (Life Technologies, Grand Island, NY). The siRNA and RNAi plasmid transfections were performed using the commercially available transfection reagent lipofectamine3000 (Life technologies corporation, Grand Island, NY) as per the manufacturer’s instructions. Briefly, a transfection solution was prepared by adding 10 µl lipofectamine3000 in 200 µl of optiMEM medium to the appropriate amounts of siRNA/RNAi plasmid in 200 µl of opitiMEM. The mixture was incubated for 5 min at room temperature. The above transfection mixture was added to the human corneal fibroblasts in 1 ml of a serum-free culture medium.
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