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10 protocols using butyrophenone

1

Volatile Flavor and Isoflavone Analysis of Black Soybean Milk

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Black soybeans were purchased from NongHyup (Yeoryang, South Korea) and stored at 5 ℃ before the preparation of soybean milk. For the analysis of volatile flavor compounds, C7 − C40n-alkane standard and a 50/30 μm divinylbenzene/Carboxen/Polydimethylsiloxane (DVB/CAR/PDMS) solid-phase microextraction (SPME) fiber were purchased from Supelco (Bellefonte, PA, USA). Butyrophenone was purchased from Sigma-Aldrich Chemical Co. (St. Louis, MO, USA) as an internal standard. For the analysis of isoflavones, daidzein, genestein, glycitein, daidzin, and genistin (Sigma-Aldrich Chemical Co.) were used as standards. HPLC-grade water, acetonitrile, acetic acid, and methanol were purchased from J.T. Baker (Philipsburg, NJ, USA). All chemicals and reagents used in the study were of analytical grade.
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2

HPLC Characterization of Organic Compounds

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Uracil, acetanilide, methyl and ethyl esters of p-hydroxybenzoic acid (parabens), acetophenone, propiophenone, butyrophenone, benzophenone, valerophenone, hexanophenone, heptanophenone, and octanophenone were from Sigma-Aldrich (St. Louis, MO). Stock solutions, 25 mM, were made in acetonitrile (Chromsolv, LC-MS grad, Fisher Scientific, Fair Lawn NJ). Samples were diluted to concentrations from 5 to 20 µM with deionized water. Sample concentrations were selected to maximize concentration while factoring in column loadability and solubility. Water was from a Millipore Milli-Q Synthesis A10 purification system (Billerica, MA). Peptide samples were from an LC-MS grade BSA tryptic digest from Fisher. The lyophilized sample was diluted, as per reagent instructions, to 1 pmol/µL in 95:5 0.1% Formic acid/acetonitrile. Formic acid was from Sigma. The BSA sample was stored at −5 °C when not in use and used within 48 h of thawing/dilution.
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3

Optimization of LC-MS Protocols

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ACN-D3 and D2O were obtained from Sigma-Aldrich (Steinheim, Germany). LC-MS grade acetonitrile (ACN) and water (H2O) were purchased from VWR Belgium (Leuven, Belgium).
Butyrophenone was purchased from Sigma-Aldrich (St. Louis, MO). Zorbax 300SB C18 (4.6 ×100 mm, dp 3.5 µm), Zorbax SB C8 (4.6 × 100 mm dp 3.5µm) and Zorbax SB C18 (4.6 ×100 mm, dp 3.5 µm) columns were obtained from Agilent Technologies (Waldbronn, Belgium).
Other column details are given in Table 1.
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4

Mass Spectrometry Characterization of Organic Analytes

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Benzene (99.8%), toluene
(99.7%), chlorobenzene (99.7%), benzonitrile (99%), butyrophenone
(99%), 1-phenyl-2-butanone (98%), 4-phenyl-2-butanone (98%), retinol
(95%), pseudoionone (>90%), 2,6-dimethyl-2,4,6-octatriene (80%),
tetracene
(98%), pentacene (99%), and chloroform (99.9%) were purchased from
Sigma-Aldrich (Vienna, Austria). Benzo[a]pyrene (99.6%)
was from LGC Standard. Methanol (99.9%) and acetonitrile (99.9%) were
purchased from Honeywell. For the solid analytes (PAHs and retinol),
solutions with concentrations of 50 μmol/L were prepared in
pure solvents, while for the liquid analytes (benzene derivatives
and ketones) the concentration of the measured solutions was 0.01%
v/v. The head space of the volatile analytes (benzene derivatives
and ketones) was injected into the ionization source as vapor samples.
A syringe pump (KD Scientific, series 100, USA) was used to inject
the solutions with flow rate of 20 μL min–1 into the nebulizer. A commercially available tune mix (ESI-L Low
Concentration Tuning Mix, G1969-85000, Agilent Technologies) was prepared
according to manufacturer instructions for tuning and accurate mass
calibration of the mass spectrometer.
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5

Retention Measurement and Optimization Protocol

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The data used here are from a series of more than 12,000 retention measurements for 35 solutes on nine columns for multiple mobile phase compositions as reported by Kempen et al. [15] (link). This resulted in 315 separate cases for testing the proposed re-parameterization and experimental design. Lists of the compounds and columns are provided in the supplementary material as Tables S1 andS2. These data are freely available for interested researchers [15, (link)16] Further experimental details are provided in reference [15] (link) Retention data were collected for acetophenone, butyrophenone, 4,4'-dipyridyl, pnitrophenol and nortriptyline (obtained from Sigma Aldrich). Isocratic retention measurements were carried out for organic phase compositions that led to retention factors in the range of 1 to 20, at seven different organic compositions for each compound. Gradient measurements were obtained using the gradient design proposed here.
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6

Volatile Profiling of Nut-Based Milk Beverages

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All samples of nut-based milks (i.e., almond beverages, walnut beverage, peanut beverage, almond and cacao beverage) were obtained from the local market in Thessaloniki, Greece. All samples were stored in the refrigerator (+4 °C). Butyrophenone (purity ≥99%) was used as internal standard (IS) solution (Sigma-Aldrich, St. Louis, MO, USA). A stock solution of IS was prepared in methanol (Panreac, Barcelona, Spain) at a concentration of 1000 mg L−1. A stock standard solution containing heptane (purity >99%, Sigma-Aldrich), a-pinene (purity >95%, Fluka, St. Gallen, Swiss), toluene (purity >99.8%, Sigma-Aldrich), 2-methylpyrazine (purity >99%, Sigma-Aldrich), 3-heptanone (purity >98%, Sigma-Aldrich), heptanal (purity >95%, Sigma-Aldrich), 2-octanone (purity >98%, Sigma-Aldrich), 1-heptanol (purity >98%, Sigma-Aldrich), benzaldehyde (purity >99%, Sigma-Aldrich) and 1-octanol (purity >99%, Sigma-Aldrich) was prepared in methanol (concentration of each analyte 1000 mg L−1) and used for the identification of the volatile compounds and method validation. Τhe stock solution was stored in the refrigerator (+4 °C) and it was found stable for up to 2 months. Working standard solutions were prepared daily by diluting appropriate amount of stock standard solution and IS solution in distilled water.
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7

Analytical Characterization of JAK Inhibitor

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Reference standard JAK01 (CPL409116) and its impurities (JAK07, JAK08, JAK09, JAK ImpA, JAK ImpB, JAK ImpC, JAK ImpD, JAK ImpE, and JAK SM-05) were manufactured in-house by Celon Pharma S.A. (Lomianki, Poland).
Mix reference substances to the distribution coefficient chromatographically determinations (CHI logD) including paracetamol, acetanilide, acetophenone, propiophenone, butyrophenone, and valerophenone (purity >99.0%) were purchased from Sigma-Aldrich Chemie GmbH (Steinheim, Germany).
Acetonitrile (ACN) (hypergrade for LC-MS), and methanol (MeOH, hypergrade for LC-MS) were purchased from Merck KGaA (Darmstadt, Germany), and dimethyl sulfoxide (DMSO, for HPLC) from POCH (Gliwice, Poland). Formic acid (98–100%, eluent additive for LC-MS) and ammonia (25% solution, eluent additive for LC-MS) were obtained from CHEM-LAB NV (Zedelgem, Belgium). Ultra-pure water for HPLC was obtained from the water purification system Milli-Q IQ 7000 from Merck KGaA (Darmstadt, Germany).
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8

SCRA Hydrophobicity Determination by CHI

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Log D (pH 7.4) was determined by chromatographic hydrophobicity index (CHI) measurements for the (S)-enantiomer of each SCRA involved in this study. A calibration mix of ten compounds at 10 µg mL−1 in 1:1 (v/v) water:ACN was used (theophylline, phenyltetrazole, benzimidazole, colchicine, phenyltheophilline, acetophenone, indole, propiophenone, butyrophenone and valerophenone (all Sigma-Aldrich)). Test compounds were prepared at 0.25 mM in 1:1 (v/v) water:ACN. Samples (n = 2 for calibration standards; n = 1 for test compounds) were analysed using UPLC-PDA as described above. Retention times of calibration compounds are used to calculate retention factor (k), which is plotted against literature CHI values for each compound. Linear regression was performed to obtain a line of best fit, from which the CHI and subsequently CHI log D of calibration and test compounds are calculated. Calculations used and calibration data from CHI log D studies are provided in Section S3 of the supplementary information.
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9

HPLC Characterization of Aromatic Compounds

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Uracil (99%), phenol (99%), acetophenone (99%), butyrophenone (99%), valerophenone (99%), hexanophenone (99%), heptanophenone (98%), octanophenone (99%), and benzanthracene (99%) were purchased from Sigma-Aldrich (Bornem, Belgium).
Acetonitrile (ACN, HPLC grade) was obtained from Biosolve (Valkenswaard, The Netherlands). Ultra-pure water (18.2 MΩ•cm) was generated by a Milli-Q water purification system (Millipore, Molsheim, France). Uracil (t0 marker), acetophenone, butyrophenone, valerophenone, hexanophenone, heptanophenone, octanophenone, and benzanthracene were dissolved separately in 70:30% (v/v) ACN:H2O at 1 g/L as stock solutions. The sample was prepared by mixing and diluting aforementioned solutions in 70:30% (v/v) ACN:H2O yielding 5 μL/L for acetophenone, 10 mg/L for Uracil, 10 μL/L for phenol and butyrophenone, 20 μL/L for valerophenone, hexanophenone, heptanophenone, 20 mg/L for benzanthracene, and 30 μL/L for octanophenone.
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10

Synthesis and Characterization of Silica-Based Stationary Phases

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Toluene (HPLC grade, ≥99.8%), urea, tetramethoxysilane (TMOS), metyltrimethoxysilane (MTMS), 1 M aqueous acetic acid solution, polyethylene glycol (PEG) of molecular weight (MW) = 10,000 g/mol, thiourea, acetophenone, propiophenone, butyrophenone, valerophenone, hexanophenone, heptanophenone and octanophenone were purchased from Sigma-Aldrich (Overijse, Belgium). Trifluoroacetic acid (TFA, LC-MS Ultra grade) was purchased from Fluka (Buchs, Switzerland). Octadecyldimethyl-N,Ndimethylaminosilane (ODS-DMA) was purchased from ChemPur Feinchemikalien und Forschungsbedarf GmbH (Karlsruhe, Germany). Acetonitrile (ACN, HPLC supra-gradient grade) was purchased from Biosolve B.V. (Valkenswaard, the Netherlands). N-(Trimethylsilyl)-imidazole (TMSI) was obtained from Merck Schuchardt OHG (Hohenbrunn, Germany). Deionized water was produced in-house with a Milli-Q water purification system of Merck Millipore (Billerica, MA, USA). PTFE filters (0.20 µm × 25 mm) were purchased from Macherey-Nagel (Düren, Germany). MassPREP Peptide Mixture was purchased from Waters (Milford, MA, USA). Fused-silica capillaries of 20 µm i.d. (90 µm outer diameter (o.d.)) and 40 µm i.d. (105 µm o.d.) were purchased from Polymicro Technologies (Phoenix, AZ, USA).
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