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3 protocols using plko 1 puro shrna vector

1

Genetic manipulation of GSK-3β in cell lines

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All cell lines (HeLa, MDA-MB-231, and HEK293T) were obtained from the American Type Culture Collection and were maintained in Dulbecco’s modified Eagle medium (DMEM, Gibco, 8121298) supplemented with 10% fetal bovine serum (FBS, Gibco, 2176398) and 1% penicillin–streptomycin at 37 °C with 5% CO2.
The following regents were used in this study: Erastin (E7781), Fer-1 (S7243), and LY2090314 (S7063) were purchased from Selleck (Houston, TX, USA). The coding region of GSK-3β gene was cloned into the pCMV vector in-frame with a myc tag within the vector. The pLKO.1-puro shRNA vector was obtained from Sigma-Aldrich (SHC001). The pLKO.1-shGSK-3β 1# and 2# were constructed using specific primer containing separate targeting sequence. (targeting sequence to GSK-3β 1#: 5′-CACTGGTCACGTTTGGAAAGA-3′, GSK-3β 2#: 5′-CCCAAACTACACAGAATTTAA-3′).
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2

Silencing p38γ and PIK3CA in Hut78 and H9 cells

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MISSION shRNA Lentiviral Transduction Particles (company validated) expressing five shRNAs in pLKO.1-puro shRNA vector that targets four exons of the human p38γ gene (MAPK12) and scrambled transduction particles (pLKO.1-puro shRNA vector-only) were purchased from Sigma-Aldrich. Four shRNA lentiviral particles each contain unique 29mer target human PIK3CA-specific shRNA (catalog #TL310428V) and one Lenti shRNA scramble control particles (catalog #TR30021V) are from OriGene Technologies, Inc. (Rockville, MD). Hut78 and H9 cells growing exponentially (70%–80% confluent) were seeded into 6-well plates (2 × 105 cells/well) before transduction. Viral transduction efficiencies were improved by adding polybrene (hexadimethrine bromide, Sigma-Aldrich) to a final concentration of 8–10 μg/ml. Hut78 and H9 cells were transduced at a multiplicity of infection of 2. Hut78 and H9 cells were incubated overnight with the medium containing lentiviral particles and polybrene; then the medium containing lentiviral particles was removed from wells and replaced with fresh medium. Cells were collected on day 5 after transduction before RNA extraction and protein isolation.
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3

Silencing p38γ and PIK3CA in Hut78 and H9 cells

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MISSION shRNA Lentiviral Transduction Particles (company validated) expressing five shRNAs in pLKO.1-puro shRNA vector that targets four exons of the human p38γ gene (MAPK12) and scrambled transduction particles (pLKO.1-puro shRNA vector-only) were purchased from Sigma-Aldrich. Four shRNA lentiviral particles each contain unique 29mer target human PIK3CA-specific shRNA (catalog #TL310428V) and one Lenti shRNA scramble control particles (catalog #TR30021V) are from OriGene Technologies, Inc. (Rockville, MD). Hut78 and H9 cells growing exponentially (70%–80% confluent) were seeded into 6-well plates (2 × 105 cells/well) before transduction. Viral transduction efficiencies were improved by adding polybrene (hexadimethrine bromide, Sigma-Aldrich) to a final concentration of 8–10 μg/ml. Hut78 and H9 cells were transduced at a multiplicity of infection of 2. Hut78 and H9 cells were incubated overnight with the medium containing lentiviral particles and polybrene; then the medium containing lentiviral particles was removed from wells and replaced with fresh medium. Cells were collected on day 5 after transduction before RNA extraction and protein isolation.
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