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3 protocols using plasmid extraction kit

1

E. coli Molecular Manipulation Protocol

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Molecular manipulation was performed according to a standard protocol for Gram-negative bacteria. E. coli APEC40 (WT) genomic DNA and plasmid DNA were extracted using a genome extraction kit (Sangon Biotech, Shanghai, China) and plasmid extraction kit (Transgen, Beijing, China), respectively. PCR amplification was conducted by using Taq or PrimeSTAR® Max DNA Polymerase (Takara Bio Inc., Dalian, China). A gel purification kit was used to purify the PCR products and DNA restriction fragments (Transgen, Beijing, China). DNA restriction endonuclease (Thermo Fisher Scientific, Waltham, MA, USA) digestion and homologous recombination (Vazyme, Nanjing, China) were conducted using standard methods. The primer sequences used are listed in Table 2.
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2

Plasmid Extraction and Lentiviral Transduction

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After vaccination and amplification of single colonies, a small Plasmid
Extraction Kit (EM101, TransGen Biotech) was used to extract plasmid. 293 T
cells were co-transfected with pLVXGOLM1-ZsGreen-Puro to obtain high titer
lentiviral (rLV-GOLM1) containing target gene by Lentiviral packaging kit (R003,
Wuhan Viraltherapy Technologies Co. Ltd). A total of 5  ×  105cells/ml cells were transferred to cell plates when cell confluences reached 80%
to 90%. And the cells were transfected by rLV-FBXW7 on the basis of MOI  =  20
the next day. lentivirus-infected cells were selected using complete medium
(DMEM with 10% FBS and 1% penicillin-streptomycin) with 10 mg/ml puromycin after
2 days transfection,
SiRNA was constructed and obtained from Wuhan Viraltherapy Technologies Co. Ltd
Lipofectamine RNA iMAX (Invitrogen) was used to transfect SiRNA into cells. At
least 48 h later, cells were then harvested for protein extraction.
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3

Comprehensive Molecular Profiling Protocol

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DMEM medium, fetal bovine serum, T4 ligase, T7 endonuclease, Escherichia coli DH5α, plasmid extraction kit, genomic DNA extraction kit, reverse transcription kit, and SYBR® Green RT-PCR Master Mix were purchased from TransGen Biotech Co (Beijing). ACCUTASE™ cell digestion solution was purchased from eBioScience Inc. Western blot antibodies, STAT1 (14994), p-STAT1 (Tyr701, 7649P). STAT3 (9132), p-STAT3 (Tyr705, 9145), STAT5 (9363p), p-STAT5 (Y694, 4322). AURKA (14475), p-AURKA (Thr288, 3079), PD-L1 antibody (13684), p-AKT (Ser473, 4060), AKT (pan) (4691), p-ERK/ERK antibody (4370), GAPDH (5174), β-tubulin (2128) were purchased from Cell Signaling Technology, CD3 histochemical antibody (100219), CD8 histochemical antibody (104705) were purchased from Biolegend, and 4% paraformaldehyde were purchased from Wuhan Seville Biological LTD. DAB histochemical staining kit was purchased from Zhongshan Jinqiao Biological Technology LTD (Beijing). ECL luminescence color reagent was purchased from Healthcare. Trizol RNA extraction reagent was purchased from Sigma-Aldrich (T9424). Anti-mouse PD-L1 Antibody was purchased from BioXcell.
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