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32 protocols using clarity max ecl substrate

1

Western Blot Protein Detection Protocol

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Lysates were loaded at 15 μg in Mini Protean 4–15% polyacrylamide gels (Bio Rad, 4508084). Electrophoresis was run at 120 V for 50 min in 1x tris-glycine-SDS running buffer [25 mM tris base (Sigma, T1503-1KG), 190 mM glycine (Fisher, BP381-1), 0.1% sodium dodecyl sulfate (Fisher, BP243-1)]. Proteins were transferred to Immobilon-P membranes (Millipore, IPVH85R) at 120V for 65 min at 4C in 1x tris-glycine-methanol transfer buffer [25 mM tris base, 190 mM glycine, 20% methanol (Fisher, A412P-4)]. Membranes were blocked with 5% milk (CAT) in 1x tris buffer saline with Tween-20 [TBST; 20 mM tris base, 150 mM Tween-20 (Sigma, P9416-100mL)] for 120 min at RT. Membranes were washed 3x with 1x PBS and incubated with appropriate primary antibody (Table 4) diluted in 4% BSA (Sigma, A9418-50G) in 1x PBS overnight at 4C. Membranes were washed 3x with 1x PBS and incubated with appropriate secondary antibody diluted in 1% BSA in 1x TBST for 60 min at RT. Membranes were washed 3x with 1x PBS and incubated with Clarity Max ECL substrate (Bio Rad, 1705061) for 5 min. Chemiluminescence images were obtained using the ChemiDoc imaging system (Bio Rad, 17001401). Volumetric band intensities were analyzed using Bio Rad Image Lab software.
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2

Western Blot Protein Analysis Protocol

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20 μg of protein from each sample was loaded on a 4–12% Bolt Bis-Tris gel (Thermo Fisher Scientific #NW04125BOX), samples were run using Bolt MES SDS running buffer (Thermo Fisher Scientific #B0002). Proteins were transferred to Trans-Blot Turbo Mini PVDF membranes (BioRad #1704156) using the mix transfer setting of a Trans-Blot Turbo Transfer System. Membranes were blocked with 5% milk prepared in TBST for an hour at RT. Antibodies were diluted 1:2000 in 5% milk in TBST and incubated overnight at 4 °C. HRP-conjugated secondary antibodies were used at 1:10,000 dilution in 5% milk in TBST and protein bands were imaged using Clarity Max ECL Substrate (BioRad #1705062) and an iBrighty Imaging system.
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3

Western Blot Analysis of ACE2 Protein

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Cell protein was isolated using Cell Lysis Buffer (Cell signalling, USA) supplemented with protease inhibitor cocktail (Sigma, USA) and the quantification performed using BCA Protein Assay Kit (Thermofisher Scientific, UK). Western blotting was performed using 4–12%, pre-cast Bis-Tris gradient gels (Thermofisher Scientific, UK) and 25 µg of protein was loaded per lane. Immunoblots were incubated with anti-ACE2 (ab108252; Rabbit monoclonal-Abcam-EPR4435(2)—1:500 dilution of stock antibody) diluted in 5% skim milk/Tris buffered saline with 0.1% Tween-20 for overnight at 4 °C. A loading control of GAPDH was also used to demonstrate protein loading (ab8245; Mouse monoclonal-anti-GAPDH antibody [6C5] at 1:10000 dilution of stock antibody). Following day immunoblots were incubated with an anti-mouse-HRP and anti-rabbit-HRP conjugated secondary antibodies (Dako, USA) at 1:2500 for 1 hr at room temperature. Visualization was performed with Clarity Max™ ECL Substrate (Biorad, UK) on a Licor C-DiGit. For more information on the anti-ACE2 antibody, please refer to the manufacturer’s datasheet here: ab108252.html">https://www.abcam.com/ace2-antibody-epr44352-ab108252.html. Two replicates were performed for the western blot.
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4

CNC-derived Osteoblast Protein Profiling

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CNC-derived osteoblast lysates or skull tissue lysates were prepared in RIPA buffer. After centrifugation at 15,000 g, supernatants were separated by SDS/PAGE, blotted onto a PVDF membrane, analyzed with specific antibodies, and visualized with enhanced chemiluminescence. Antibodies used were as follows: GM130 (1:500, BD Biosciences; 610822), GMAP210 (1:500, LS Biosciences, LS-C20059), and α-tubulin (1:5,000, Abcam, ab7291). The Clarity Max ECL Substrate (Bio-Rad) was used for chemiluminescent detection, and signals were quantified with Image Lab Version 5.0 (Bio-Rad).
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5

HSV-1 Infection and β-Catenin Regulation

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Neuro-2A cells were grown in MEM containing 2% FBS and pre-treated with either 10 μM KYA1797K, 25 nM LY2090314 or both for 2 h. Cells were infected with HSV-1 at an MOI:1 for 1 h as described. 24 h later cells were harvested, lysed in RIPA buffer (150 mM NaCl, 1.0% Triton X-100, 0.5% sodium deoxycholate, 0.1% SDS and 50 mM Tris, pH 8.0) with protease inhibitors (Roche) overnight at 4°C. Cell debris was pelleted and protein concentrations were quantified using Bradford assay. Proteins were separated using 12% SDS PAGE, transferred to polyvinylidene difluoride membrane (Immobilon-P; Millipore), and blocked for 1 h in 5% w/v nonfat dry milk (NFDM) with 1× Tris-buffered saline–0.1% Tween 20 (TBST). Membranes were incubated in rabbit anti-β-catenin primary antibody (LifeSpan Bio, Seattle WA, 1:250) overnight at 4°C. Glyceraldehyde-3-Phosphate Dehydrogenase (GAPDH; Santa Cruz Biotechnology, Santa Cruz, CA 1:1000) was used as a loading control. Membranes were incubated with HRP-conjugated secondary antibodies (Vector Labs) diluted 1: 5,000 in 5% NFDM in TBST for 1 h prior to detection using BioRad Clarity MAX ECL substrate. Images were captured using an Amersham imager 600 (GE) and analyzed using ImageLab V6.1.0.
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6

Sporozoite Reactivity of Purified IgGs

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The reactivity of pools of purified IgGs before immunization (n = 10) and after immunization (n = 10), or those depleted (n = 6), was assessed in a Western blot on sporozoite lysates. To generate the lysates, 1 million NF54 sporozoites were incubated with 100 μL of lysis buffer (150 mM Nacl, 20 mM Tris-Hcl, 1% triton, 1 mM EDTA at pH 7.5 and 1× protease inhibition cocktail; Thermo Fisher Scientific) for 15 minutes on ice followed by a 10-minute centrifugation at 13,000g at 4°C. Protein lysate corresponding to 1 × 105 sporozoites were loaded per well on a 4%–12% Bis-Tris Protein Gels. Proteins were transferred into a nitrocellulose membrane (Bio-Rad), and strips were made. After blocking for 1 h with 5% milk in PBST, the blots were incubated for 3 hours with 5 μg/mL of CIS43 (CSP-specific mAb; ref. 42 (link)) or pre- or postimmunization total or depleted purified IgGs tested at 5-point 1:2 dilution at a maximum concentration of 20 μg/mL. After 3 washes with PBST, we incubated samples with secondary antibody (goat anti–human IgG [H+L], HRP, 1:30,000, Thermo Fisher Scientific catalog A18805; polyclonal). Then, blots were washed 6 times with PBST and incubated with Clarity max ECL substrate (Bio-Rad). The imaging was performed in ImageQuant LAS4000 (Bio-Rad). The intensity of the bands was analyzed using ImageJ (NIH).
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7

Western Blot Analysis of IFT20 and GAPDH

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Cell lysates were separated by SDS-PAGE (Bio-Rad; 4561036). Anti-IFT20 (Proteintech; 13615-AP, 1:1,000), anti-GAPDH (Cell Signaling technology; 14C10, 1:10,000), and Goat anti-rabbit IgG HRP-conjugate (Millipore sigma; 12-348, 1:5,000) antibodies were used for western blotting. The Clarity Max ECL Substrate (Bio-Rad; 1705061) was used for chemiluminescent detection, and the signals were quantified with the image-J software.
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8

Western Blot Analysis of Fibronectin

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Briefly, 60 μg of NF and Ty-82 cell lysate was spotted onto the nitrocellulose membrane at the center of the grid of a Bio-Dot SF Microfiltration Apparatus (BioRad, Milan, Italy). FN was used as a positive control. The membranes were dried and blocked by soaking in 5% BSA in TBS-T for 1 h at room temperature. The membranes were incubated for 1 h at room temperature with monoclonal antibodies anti-fibronectin BC-1 (1:500, Abcam, Cambridge, UK), L19-sip (1 µg/mL, Philogen SpA, Siena, Italy), and anti-β-Actin (Cell Signaling Technology, Danvers, MA, USA, 1:1000) diluted in BSA/TBS-T. After three washings with TBS-T, the membranes were incubated with secondary antibody HRP-conjugated goat anti-mouse IgG (BioRad, Milan, Italy, 1:1000) for 30 min at RT. Subsequently, the membranes were washed three times with TBS-T to remove unbound antibody and then incubated with Clarity Max ECL Substrate (BioRad, Milan, Italy) for 1 min. Chemiluminescence was detected with ChemiDoc MP Imaging System.
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9

Western Blot Analysis of Inflammatory Caspases

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Total of mouse splenocytes, CD11b+ cells, BMDM, or monocytes from patients were lysed with RIPA buffer solution with a protease inhibitor cocktail. After 15 min on ice, lysates were centrifuged at 13,000 × g for 10 min at 4 °C. The proteins were separated in a 12%-acrylamide (caspase-11 and caspase-8) or 4–12% acrylamide (caspase-1/caspase-4/GSDM-D) NUPAGE Bis-tris Protein gels (Invitrogen) and transferred onto nitrocellulose membranes. The membranes were incubated with caspase-11 (Novus Biologicals, 1:1000), caspase-1 (Adipogen, 1:1000), caspase-4 (Cell Signaling, 1:1000), anti-mouse and anti-human caspase-8 (Enzo Life Science, 1:1000), anti-mouse cleaved caspase-8 (Cell Signaling, 1:500), anti-GSDM-D (sigma, 1:1000) and β-actin (Sigma, 1:2000) specific antibodies, then incubated with HRP-conjugated secondary antibodies (Jackson ImmunoResearch, 1:25,000) and detected with Clarity Max ECL Substrate (Biorad) using ImageLab Touch Software V6.0.1 (Bio-Rad). Bands quantification was performed with ImageStudio V5.2. Uncropped western blot is available in the Supplementary Information file (Supplementary Figs. 511).
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10

Quantifying Keratinocyte Protein Profiles

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Freshly isolated keratinocyte populations were harvested for CD271 in lysis buffer pH 7.5 (150 mM NaCl, 15 mMMgCl, 1 mM EGTA, 50 mM Hepes, 10% Glycerol, 1% Triton), or in RIPA buffer. WB was performed as previously described.9 (link) Membranes were first incubated in blocking buffer and then overnight at 4 °C with primary antibodies: mouse anti-human CD271, clone ME20.4 (Upstate, Lake Placid, NY, USA), mouse anti-human β1 integrin, clone 12G10 (Abcam, Cambridge, UK), rabbit anti-FOXM1, clone D3F2B (Cell Signaling Tech, Danvers, MA, USA), rabbit anti-p63(ΔN) (BioLegend, San Diego, CA, USA), rabbit anti-Survivin (Boster, Pleasanton, CA, USA), rabbit anti-p16INK4 (Bethyl Laboratories Inc, Montgomery, TX, USA), rabbit anti-Ki67 (Abcam), mouse anti-human β-actin, clone AC-15 (Sigma). Then membranes were incubated with anti-mouse or anti-rabbit peroxidase-conjugated secondary antibodies (Biorad, Hercules, CA). Membranes were developed in Clarity Max ECL substrate (BioRad) and images were captured with ChemiDoc Imaging System (Biorad). The band intensity was quantitatively determined using Fiji-ImageJ software (Wayne Rasband, National Institute of Mental Health, Bethesda, MD, USA), and protein levels’ intensity was normalized to β-actin expression.
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