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9 protocols using d1152

1

HeLa Cell Culture Methodology

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HeLa cells were obtained from American Type Culture Collection (ATCC® CCL-2™). All cell lines were maintained in DMEM (Sigma, D1152) containing 10% fetal bovine serum (HyClone, SV30160.03) in a 5% CO2 atmosphere at 37 ℃.
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2

MCF10A Cell Culture Protocol

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MCF10A and MCF10A-ras cells were provided by Prof. Shen Hanming (National University of Singapore). All cells were maintained in DMEM (D1152; Sigma-Aldrich; Merck KGaA, Darmstadt, Germany) supplemented with 5% horse serum, 0.5 µg/ml hydrocortisone, 10 µg/ml insulin, 20 ng/ml epidermal growth factor (EGF), 0.1 µg/ml cholera enterotoxin, 100 U/ml penicillin-streptomycin, 2.5 mM L-glutamine and 0.5 µg/ml fungizone, in a humidified atmosphere containing 5% CO2/95% air at 37°C. The culture medium was replaced every 2 days.
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3

Cell Culture Protocols for Cancer Research

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HCT116 cells and HeLa cells were obtained from American Type Culture Collection (ATCC). HeLa cells stably expressing GFP-LC3 were kindly provided by Dr. N Mizushima (University of Tokyo, Japan). An isogenic pair of HCT116 colon cancer cell lines (tp53+/+ and tp53-/-) was a gift from Dr. Bert Vogelstein (Johns Hopkins University, USA). All cell lines were maintained in DMEM (Sigma, D1152) containing 10% fetal bovine serum (HyClone, SV30160.03) and 1% penicillin/streptomycin (Invitrogen) in a 5% CO2 atmosphere at 37 °C.
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4

Cell Culture Conditions for Cancer Studies

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U2-OS (human osteosarcoma) and MDA-MB-231 (triple-negative human breast adenocarcinoma) cells were grown in DMEM (Dulbecco’s Modified Eagle’s Medium with HEPES modification; Sigma, D1152) supplemented with 10% fetal bovine serum (FCS) (Biowest, S1860). CHO cells were cultured in alpha-MEM, supplemented with 5% FCS and L-glutamine.
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5

Western Blotting and qRT-PCR of Cadherin-23

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The adherent cancer cell lines HeLa, HEK293, A549, and HaCaT were obtained from NCCS, Pune. All cells were cultured in high glucose DMEM media (D1152, Sigma-Aldrich) containing 10% FBS and 5% CO2. We followed the standard protocol50 (link) for the western blotting of the lysates from the mentioned cell lines. Cadherin-23 (HPA017232, Sigma-Aldrich and PA5-43398, Invitrogen), eGFP (A11122, Invitrogen), and His-tag (11965085001, Roche) antibodies were used at the concentration of 1 μg/ml to detect the proteins.
RNA from different cancer cell lines was extracted using RNA isolation kit (Bio Rad) and treated with DNAse using DNAse 1 kit (AMPD1, Sigma-Aldrich). cDNA synthesis was done using a cDNA synthesis kit (Bio Rad). qRT-PCR was performed with the primers probing Cdh23 using the real-time PCR system (CFX96 Bio Rad).
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6

Isolation of Neonatal Rat Ventricular Myocytes

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Rats were bred at the Faculty of Chemical and Pharmaceutical Sciences Animal Breeding Facility (University of Chile). NRVM were isolated from the hearts of neonatal Sprague-Dawley rats as previously described (Kuzmicic et al., 2014 (link)). Neonatal pups, between 2–3 days old, were decapitated, and the hearts were extracted and washed with Hank’s buffer (Sigma, H2387) supplemented with NaHCO3 and HEPES, at 37°C. Cardiac atria were carefully removed, and the remanent ventricular portion was minced. The tissue was then enzymatically digested with type II collagenase (Gibco, 17101–015) (0.02 g/100 mL Hank’s) and pancreatin (Sigma, P3292) (0.06 g/100 mL Hank’s). The cell suspension was pre-plated in a 250 mL culture flask for 2–3 h in DME- (Sigma, D1152) and M199- (Sigma, M2520) containing medium, supplemented with 10% FBS (Biological Industries, 04-121-1A), to obtain a cardiomyocyte-enriched fraction. Cells in suspension were collected and centrifuged at 1,000 r.p.m. for 5 min and then resuspended in 25 mL of DME:M199 (4:1) medium, supplemented with 5% FBS and 10% NBCS (Gibco, 16010–159), to be finally seeded in gelatin 2% p/v (Winkler, GE0820) -coated plates.
All procedures and experiments in animals were performed according to NIH Guide for the Care and Use of Laboratory Animals and approved by the corresponding Institutional Ethics Committee.
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7

Isolation and Culture of Rat Neonatal Cardiac Myocytes

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Primary cultures of rat neonatal contractile cardiac myocytes (NCMs) were prepared from heart ventricles of 1- or 2-day-old rats, killed by decapitation, minced in a balanced salt solution containing 20 mmol/L HEPES, 120 mmol/L NaCl, 1 mmol/L NaH2PO4, 5.5 mmol/L glucose, 5.4 mmol/L KCl, and 0.8 mmol/L MgSO4 [pH 7.4] and then digested by using pancreatin and collagenase type II as previously described6 (link). NCMs were purified by centrifugation of the cells at 2800 rpm for 30 min on Percoll (P4937, Sigma-Aldrich) gradients (58.5% and 40.5% in the balanced salt solution). NCMs were seeded at a density 6.5 × 105 cells/well in 6-well plates coated with 10% of collagen (C8919, Sigma-Aldrich) and cultured in a medium containing 4 parts of Dulbecco’s modified Eagle’s medium (DMEM, D1152, Sigma-Aldrich) and 1 part of Medium199 (M199, M2520, Sigma-Aldrich), 10% fetal bovine serum (FBS, 30-2020, ATCC) and 1% penicillin and streptomycin (P/S, 10,000 U/mL) (15140-122, Invitrogen™, Life Technologies) at 37 °C under 5% CO2 atmosphere.
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8

Muscle Macrophage Isolation from mdx Mice

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Skeletal muscles from male and female, 1-month-old mdx mice were minced in 1.25 mg/ml collagenase types IA and IV (Sigma-Aldrich #C9891, #C5138) in Dulbecco’s Modified Eagle medium (Sigma #D1152) and digested at 37°C for 1 h with gentle trituration each 15 min. The digestate was diluted with DPBS, filtered through 70 μm mesh filters and the liberated cells collected by centrifugation. The cells were resuspended in DPBS, overlaid on Histopaque-1077 (Sigma-Aldrich #1077-1) and centrifuged at 400 x g for 30 min at RT. Macrophages were collected from the DPBS-Histopaque interface and RNA isolated from the cells as described above. QPCR was performed using tpt1 and hprt1 as house-keeping genes. Muscle macrophages were collected from five WT/mdx and three LIF/mdx mice.
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9

Cell Culture of Adherent and Suspension Lines

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The adherent cancer cell lines HeLa, HEK293, A549, and HaCat were obtained from NCCS, Pune. All cells were cultured in high glucose DMEM media (D1152, Sigma-Aldrich) containing 10% FBS and 5% CO2. The suspension cell line, ExpiCHO (#A29127), was purchased from ThermoFisher Scientific and grown in ExpiCHO expression medium at 37 ºC and 6% CO2.
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