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Rtx 5ms

Manufactured by Agilent Technologies
Sourced in United States

The Rtx-5MS is a gas chromatography column designed for a wide range of applications. It features a 5% diphenyl-95% dimethyl polysiloxane stationary phase, which provides good separation of a variety of analytes. The column is available in various lengths and internal diameters to suit different analytical needs.

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9 protocols using rtx 5ms

1

GC-FID Analysis of Essential Oils

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The analysis of the extracted essential oil was performed using an Agilent GC7890a gas chromatography equipped with a flame ionization detector (FID) and a capillary fused bonded column Rtx-5MS (Crossbond diphenyl dimethyl polysiloxane, 30 m × 0.25 mm i.d., 0.25 µm film thickness). The injector and detector temperature were kept at 250 °C and 300 °C, respectively. A volume of 1 μL solution, prepared by 5% vol. EO dilution in n-hexane was injected in split mode (1:50). Nitrogen was used as a carrier gas at a flow rate of 1 mL/min. The column temperature was programmed at 60 °C to 280 °C with an increase increment of 3 °C/min and then left maintained at 280 °C for 5 min. The percentages of the chemical constituents were calculated relative to peaks areas determined by electronic integration of the FID detector.
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2

GC-MS Analysis of Essential Oils

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An Agilent 7890A gas chromatograph (Agilent Technologies, Palo Alto, CA, USA) with a capillary column RTX-5MS (30 m × 0.32 mm, film thickness 0.25 μm) was used for the GC/MS analysis of the essential oils. This was coupled to an Agilent 5975C mass selective detector. The initial oven temperature was 40 °C for 2 min, then it was raised at the rate of 5 °C/min until it reached 210°. The injector and detector temperatures were 290 and 300 °C, respectively. Helium carrier gas was used at a flow rate of 2 ml/min. Manual split mode injection was applied (0.1 μl, each). EI mode was used for recording the mass spectra. The range for m/z was 35–500. Ionization voltage was 70 eV and ion source temperature was set at 230 °C. The above conditions were applied for the analysis of a homologous series of n-alkanes to calculate Kovat’s index (KI). Identification was based on comparison of KI with literature (Adams 2007 ), in addition to obtained data from Wiley’s MS libraries. Authentic compounds (Sigma-Aldrich, Germany) were also used for identification of some compounds.
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3

GC-MS Analysis of Essential Oils

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An Agilent 7890A gas chromatograph (Agilent Technologies, Palo Alto, CA, USA) with a capillary column RTX-5MS (30 m × 0.32 mm, film thickness 0.25 μm) was used for the GC/MS analysis of the essential oils. This was coupled to an Agilent 5975C mass selective detector. The initial oven temperature was 40 °C for 2 min, then it was raised at the rate of 5 °C/min until it reached 210°. The injector and detector temperatures were 290 and 300 °C, respectively. Helium carrier gas was used at a flow rate of 2 ml/min. Manual split mode injection was applied (0.1 μl, each). EI mode was used for recording the mass spectra. The range for m/z was 35–500. Ionization voltage was 70 eV and ion source temperature was set at 230 °C. The above conditions were applied for the analysis of a homologous series of n-alkanes to calculate retention index (RI). Identification was based on comparison of KI with literature [39 ], in addition to obtained data from Wiley’s MS libraries. Authentic compounds (Sigma-Aldrich, Germany) were also used for identification of some compounds (Table 2).
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4

Pesticide Analysis by GC-MS

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The pesticide analyses were performed using GC–MS QP 2010 plus (Shimadzu, Kyoto, Japan). Chromatographic separation was conducted with a fused silica capillary column Rtx-5MS, crossbonds 5% diphenyl and 95% dimethylpolysiloxane (30 m × 0.25 mm I.D., film thickness of 0.25 m, J & W Scientific, Folsom, CA, USA). Helium (purity ≥ 99.999%) was used as carrier gas at a constant flow of 1.0 mL/min. The temperature program was set initially at 100 °C for 2.5 min; ramp to 200 °C at a rate of 15 °C/min; 250 °C at 10 °C/min and finally to 300 °C at a rate of 6 °C/min being held for 2 min with total run time of 24 min. Injector temperature was maintained at 280 °C, and the injection volume was 1.0 µL in a splitless mode. Mass spectrometric parameters: electron impact ionization mode with an ionizing energy of 70 eV, injector temperature 250 °C, interface temperatures 230 °C, ion source temperature 200 °C. The mass spectrometer was operated in the selective ion monitoring (SIM) mode and the characteristic ions are given in Table 5. Full-scan data were acquired in the range of m/z 50–900 to obtain the fragmentation spectra of the analytes. The fragments of the ions monitored in SIM mode were selected based on good selectivity and high sensitivity.
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5

GC-MS Analysis of Metabolite Derivatization

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The derivatized samples were analyzed using GC-MS (QP2020, Shimadzu, Kyoto, Japan). Rtx-5 MS with a fused silica capillary column (30 m × 0.25 mm ID, J&W Scientific, Folsom, CA, USA) was used for the separation of metabolites. The front inlet temperature was set to 230°C. The column temperature was isothermally held at 80°C for 2 min, increased by 15°C/min to 330°C, and isothermally held for 6 min. The transfer line and ion source temperatures were 250°C and 200°C, respectively. Ionization was achieved with a 70 eV electron beam. The flow rate of helium gas through the column was 1 mL/min. Twenty scans per second were recorded over the mass range of 85–500 m/z. Chromatograms and mass spectra were acquired using Shimadzu GC solution (Shimadzu, Kyoto, Japan).
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6

Derivatization and GC-TOF-MS Analysis of Rice Koji Samples

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The derivatization steps of extracted rice koji samples were as described by Lee et al. [11 (link)]. GC–TOF–MS analysis was conducted on an Agilent 7890A GC system (Santa Clara, CA, USA) with a Pegasus HT TOF-MS (Leco Corporation, St. Joseph, MI, USA). The carrier gas (helium) was used with an RTx-5MS (30 m length × 0.25 mm inner diameter, J&W Scientific, Folsom, CA, USA) at a constant flow rate of 1.5 mL/min. The temperatures of the injector and ion source were maintained at 250 and 230 °C, respectively. The oven temperature was maintained at 75 °C for 2 min and then increased to 300 °C at 15 °C/min, which was sustained for 3 min. Then, 1 μL of sample was injected with a mass scan range of m/z 50–800. All sample analyses were performed with three analytical replicates.
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7

Metabolite Profiling by GC-TOF-MS

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For GC-TOF-MS analysis, the redissolved samples were dried using a speed vacuum concentrator. The dried samples were derivatized as follows: (1) the oximation was performed by adding 50 µL of 20 mg/mL methoxyamine hydrochloride in pyridine to the dried samples and incubating at 30 °C for 90 min (2) the silylation was performed by mixing 50 µL of MSTFA to the mixture and incubating at 37 °C for 30 min. The derivatized samples were filtered using Millex GP 0.22 µm filters (Merck Millipore, Billerica, MA, USA).
GC-TOF-MS analysis was performed using an Agilent 7890A GC system (Santa Clara, CA, USA) equipped with Rtx-5MS (length 30 m, inner diameter 0.25 mm, J&W Scientific, Folsom, CA, USA) coupled with an Agilent 7693 autosampler and a Pegasus® HT TOF-MS (LECO Corp., St. Joseph, MI, USA). The analysis parameters were adapted from a previous study [2 (link)]. Three biological replications were analyzed for each sample.
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8

GC-TOF-MS Analysis of Derivatized Samples

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The gas chromatography time-of-flight mass spectrometry analysis was performed on an Agilent 7890A gas chromatograph system (Santa Clara, CA, USA) with a Pegasus HT TOF-MS (Leco Corp., St. Joseph, MI, USA). A Rtx-5MS (30 m length, 0.25 mm inner diameter, J&W Scientific, Folsom, CA, USA) was used to provide the carrier gas helium (He) at a constant flow rate of 1.5 mL/min. Each derivatized sample (1 µL) was injected into the GC-system under split mode (5:1). The injector and ion source temperatures were keeped at 250 °C and 230 °C, respectively. The oven temperature was set at 75 °C for 2 min and then increased to 300 °C at 15 °C/min, which was sustained for 3 min. The detector voltage was 1650 V, and mass scan range was 50–1000 m/z. Three analytical replications were conducted for each FSP sample.
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9

GC-MS Analysis of Volatile Compounds

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A Shimadzu 2010 (Shimadzu, Tokyo, Japan) gas chromatograph was equipped with a split-splitless auto-injector (model AOCi) and an auto sampler (model AOC-20i), and a MS-QP 2010 (Shimadzu) series mass selective detector was used for sample analysis. The analytical conditions were as follows: GC: column, Rtx-5MS (30.0 m × 0.25 mm × 0.25 μm; J&W, Palo Alto, CA, USA); carrier gas, helium; flow rate, 1.01 ml/min; column temperature, 40 °C held for 2 min, then at the rate of 6 °C / min to 180 °C (held for 2 min), and 15 °C/min to 270 °C. MS: analytical mode, full-scan; mass range, m/z 50-400.
Identification of volatile compounds. Retention indices (RI) were calculated based on retention times of n-alkanes, which were injected after volatiles under the same conditions. Relative contents were calculated based on GC peak areas without correction factors. The volatile compounds were identified by comparing mass spectral data with those of authentic samples in a mass spectra library (Turbo Mass ver. 5.4.2, NIST11), and the compounds were confirmed by comparing RI values with published data (Davies 1990; Farag 2008; (link)Abdallah et al. 2016 (link)).
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