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Dm2500

Manufactured by Zeiss
Sourced in Germany

The DM2500 is a microscope system designed for materials science research and analysis. It features high-resolution optics and advanced imaging capabilities. The core function of the DM2500 is to provide users with a versatile platform for examining and studying a wide range of materials and samples.

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7 protocols using dm2500

1

Quantifying Myotube Formation and Structure

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Images were captured using a Leica DM2500 (monolayer) or a Zeiss LSM 880 confocal (3D) microscope. Morphological measures; fusion index (number of nuclei in myotubes represented as a percentage of the total number of nuclei in the image frame), myotube density per 100 μm (number of myotubes measured intersecting a line drawn perpendicular to the long axes of the construct, averaged from five points per image), percentage coverage (myotube width multiplied by myotubes per 100 μm) and average myotube width were all conducted manually. Total nuclei were calculated using an in‐house macro implemented in ImageJ (Schindelin et al., 2012). Analysis was conducted from nine monolayer images taken across three coverslips per biological repeat, or from a 21‐image tile scan of a 3D construct for every condition, derived from n ≥ 3 biological repeats.
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2

Quantifying Myotube Morphology

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Measuring construct width provides an indication of cell attachment and remodeling and as such, images of the macroscopic contraction of the constructs were taken throughput the culture period using an EPSON flatbed scanner [Perfection V330 Photo, 300DPI, (Smith et al., 2012 (link))]. Construct width was measured using FIJI image analysis software [version 1.5a, (Schindelin et al., 2012 (link))]. Images were captured using a Leica DM2500 or a Zeiss LSM 880 confocal and used to analyse the morphology of the myotubes including; fusion efficiency (number of nuclei in myotubes represented as a percentage of the total number of nuclei in the image frame), myotube density per 100 μm (number of myotubes measured across a 100 μm cross section of the gel), myotube length and myotube width. Analysis was conducted from 5 images taken from each construct, within each condition and repeated at least three times (n ≥ 3).
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3

Tissue Microarray Analysis of HCC

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Tissue microarrays containing 33 HCC tissue cores (2 mm in diameter, Supplementary Table S1) were ordered from the Shanghai Outdo biotech company (HLiv-HCC180Sur-05). For immunofluorescence double staining, sections were first deparaffinized and then incubated with retrieval solution (ZSGB-Bio, Beijing, China) for 15 min in a microwave oven. After treatment with 10% goat serum at 37 °C for half an hour, the tissues were incubated with anti-CD56 (Abcam, Cambridge, MA, USA) and anti-PD-1(Abcam) antibodies overnight. The sections were then incubated with FITC or PE-labeled secondary antibodies (ZSJQ-Bio). 4',6-diamidino-2-phenylindole was used for counterstaining. The staining was detected on a Zeiss DM2500 microscope with × 20 objectives.
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4

Immunofluorescence Analysis of Neural Markers

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The mice were deeply anesthetized with pentobarbital sodium (50 mg/kg, i.p.) and sequentially perfused with saline and 4% (w/v) PFA. The brains were subsequently removed and postfixed in 4% PFA at 4°C overnight. After cryoprotection of the brains with 30% (w/v) sucrose, coronal sections (40 μm) were cut on a cryostat (Leica CM1860, Germany) and used for immunofluorescence. The sections were incubated in 0.3% (v/v) Triton X-100 for 0.5 hour, blocked with 10% donkey serum for 1 hour at room temperature, and incubated with primary antibodies, including anti-c-Fos (1:500, rabbit, Santa Cruz Biotechnology, Dallas, TX), anti-glutamate (1:500, rabbit, Sigma-Aldrich), and anti-GABA (1:500, rabbit, Sigma Aldrich) at 4°C for 24 hours, followed by the corresponding fluorophore conjugated secondary antibodies for 2 hours at room temperature. Fluorescence signals were visualized using Leica DM2500 and Zeiss LSM710 microscopes and analyzed using ImageJ 1.4 (NIH). For counting immunoreactive cells, the 8-bit grayscale image was background subtracted before applying a threshold to all images. The threshold was adjusted within 10% of the average intensity, and cells at or above the threshold are considered immunopositive.
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5

Perfusion and Immunofluorescence of Mouse Brains

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After the experiment, the mice were deeply anesthetized with pentobarbital sodium (50 mg/kg, i.p.) and sequentially perfused with saline and 4% (w/v) paraformaldehyde (PFA). The brains were subsequently removed and postfixed in 4% PFA at 4 °C overnight. After cryoprotection of the brains with 30% (w/v) sucrose, coronal sections (40 μm) were cut on a cryostat (Leica CM1860) and used for immunofluorescence. Fluorescence signals expressed by the virus were visualized using a Leica DM2500 camera and Zeiss LSM710 microscope.
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6

Microscopy Visualization of P. chrysosporium

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The cultures from the SC and SSC of P. chrysosporium were observed by fluorescence microscopy (Leica DM2500, Germany) and LSCM (Zeiss LSM 800, Germany). Before observation, the cultures were dyed using Nile red (0.5 g/L) and Calcofluor fluorescent stains (mixture of 1.0 g/L Calcofluor white and 0.5 g/L Evans blue) to highlight the cell wall. Subsequently, the intracellular lipid content of the fungal cells was estimated.
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7

Histological Analysis of Brain Tissue

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The frozen brain slides used for Nissl staining and hematoxylin and eosin (HE) staining were prepared in the same way as those used to immunofluorescence staining. Nissl staining was conducted to demonstrate the number of normal neuron in cortex and hippocampus as previously reported [28 ]. The frozen brain slides were immersed with 0.5% cresyl violet (Sigma-Aldrich, St. Louis, MO, USA) solution and dehydrated with 100% alcohol. Hematoxylin and eosin (HE) staining was performed using a HE Staining Kit (C0105; Beyotime Institute of Biotechnology, Haimen, China) to determine the morphological change. After sealed with neutral balsam, the slides were observed under a light microscope (DM2500; Carl Zeiss) by a blinded investigator.
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