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8 protocols using rabbit gfp

1

Imaging Chromosome Dynamics in Drosophila

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Fixation, chromosome preparations, and live imaging were as in Schoenfelder et al. 2014 (link). Antibodies: Mouse Phospho-Histone H3 Ser10, (1:1000, Cell Signaling), Mouse Drosophila Gamma H2AV, (1:2500, Lake et al. 2013 (link)), Rabbit GFP (1:1000, Life Technologies). Nuclear labeling in all fixed images: DAPI. For EdU (Invitrogen) labeling, tissue was pulsed with EdU for 15 min., and detection was according to manufacturer’s instructions. TUNEL labeling was as in Schoenfelder et al 2014 (link). Fixed images were acquired using a Zeiss AxioImager M.2 with Apotome processing (20X, 40X or 63X). Live imaging used an Andor XD Spinning Disk Confocal Microscope (60X silicon or 100X oil).
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2

Immunohistochemistry of Skeletal Muscle

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For cryosections, skeletal muscles were embedded in Tissue-Tek O.C.T. Compound (Gentaur), frozen on 2-methylbutane–cooled liquid nitrogen, and processed for cryostat sectioning. 10-µm sections were collected from the midbelly of muscles. Immunohistochemistry was performed by fixation with 4% PFA/PBS, processing for antigen retrieval with the Antigen Unmasking Solution (Vector) at 95°C for 15 min in a thermostated microwave, permeabilization with 0.2% Triton X-100 in PBS, blocking with 5% heat-inactivated serum/0.2% Triton X-100/1% BSA/PBS, incubation with primary antibody overnight at 4°C, and then incubation with Alexa Fluor secondary antibodies for 1 h at room temperature. Nuclei were counterstained with Hoechst and slides were mounted in fluorescent mounting medium (Dako). Primary antibodies were as follows: mouse β-catenin (BD), goat Collagen Type I (SouthernBiotech), rabbit GFP (Life Technologies), rabbit Ki67 (Abcam), rabbit Laminin (Sigma-Aldrich), mouse MyoD (Dako), mouse embryonic-MyHC (Developmental Studies Hybridoma Bank), mouse Pax7 (DSHB), and rabbit Tcf4 (Cell Signaling Technology). The TUNEL reaction was performed by using the In situ cell death detection kit (Roche) according to the manufacturer’s instructions for tissue cryosections.
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3

Tight Junction Modulation in Epithelial Cells

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Antibodies used include (species-antigen): rat-Crb3 (ab180835, Abcam), rabbit-Patj (ab102113, Abcam), rabbit-Pals1 (07-708, Millipore), rabbit-ZO-1 (61-7300, Zymed), rabbit-EspF (Hecht Lab), rabbit-cleaved caspase-3 (9661S, Cell Signaling), rabbit-actin (A2066, Sigma), rabbit-HA (C29F4, Cell Signaling), rabbit-GFP (A11122, Life Technologies), mouse-Rab5 (sc-46692, Santa Cruz), mouse-E-cad (610181, BD), mouse-occludin (33-1500, ThermoFisher Scientific), mouse-Na+/K+ ATPase (610992, BD), Phalloidin Alexa fluor 568 (Life Technologies). Secondary antibodies used for immunofluorescence were Alexa fluor (Life Technologies). Drugs used were from Sigma, 10μM methyl-beta-cyclodextrin (MβCD), 400 μM monodansyl cadaverin (MDC) and 80μM dynasore (Dyn).
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4

Multimarker Immunostaining for Neuronal Diversity

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The following primary antibodies were used: mouse NeuN (1:500; Millipore); mouse Calbindin (1:1000; SWant); mouse Calretinin (1:250; BD Transduction Laboratories) rabbit Prox1 (1:500; Millipore); rabbit DCX (1:250; Santa Cruz); mouse NF-pan (1:3; Zymed); rabbit GFP (1:1000; Life Technologies). To detect primary antibodies, the following appropriate species-specific secondary antibodies were used: Goat anti-rabbit Alexa-488 (1:500; Life Technologies), Goat anti-mouse Alexa-568 (1:500; Life Technologies).
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5

Comprehensive Antibody Resource for NMDA Receptor Research

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Primary antibodies (dilutions for immunoblot in parenthesis: mouse Flag (Sigma, F3165) mouse GluN1 (1:1,000, Invitrogen, 32–0500), rabbit GluN1-1 (1:500, Millipore, AB9864), mouse GluN2A (1:1,000, BD Bioscience, 612287), rabbit GluN2A (1:500, Serotec, AHP1880), mouse GluN2B (1:1,000, BD Bioscience, 610416/7), rabbit GluN2B (1:500, Invitrogen, 71–8,600), mouse PSD95/3 (1:3,000, Thermo scientific, MA1–045), mouse PSD93 (1:2,500, Neuromab, 75-057), rabbit PSD95 (1:1,000. Abcam, ab18258), mouse GFP (Invitrogen, A11120), rabbit GFP (Invitrogen, A11122). Conjugated antibodies: mouse Flag-HRP (1:40,000, Sigma, A8592), goat mouse-HRP (1:20,000, Millipore, 12–349) and goat rabbit-HRP (1:20,000, Millipore, 12–348). Antibodies used for Fig. 7 are listed in Supplementary Data 1.
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6

Antibodies for Cellular Localization

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Antibodies used in this study included rabbit polyclonal NudE/NudEL antibody (as generated in Stehman et al., 2007 (link)), human Mitosin (CENP-Fl BD Biosciences), human CREST autoimmune serum anti (Antibodies, Inc.), mouse GST (Santa Cruz), mouse HA (Covance), rabbit GFP (Invitrogen), mouse tubulin (Abcam), mouse dynein intermediate chain (74.1; a gift from K. Pfister, University of Virginia, Charlottesville, VA), mouse phosphothreonine MAPK/CDK1 substrate AB (Cell Signaling), and rabbit p246 phospho-NudE antibody (a gift from Y. Feng, Northwestern University Feinberg School of Medicine, Chicago, IL; Alkuraya et al., 2011 (link)).
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7

Immunostaining of Drosophila Neural Tissues

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Brains and VNC of 5–7-days-old flies were dissected in dissection buffer (PBST: 0.015% triton X-100 in 1x PBS) and fixed in 4% PFA at room temperature on a shaker for 20 min, then washed for 4 × 20 min in wash buffer (0.3% triton in 1x PBS). After this, the tissues were blocked in block buffer (1x heat inactivated normal goat serum with 0.3% triton in 1x PBS) for 30 min at room temperature. The samples were then incubated with primary antibody at 4 °C overnight. The primary antibodies used were: Rabbit-GFP (Invitrogen, A11122, 1:500 dilution), Rabbit-DsRed (Rockland 39707. 1:500 dilution), Mouse-GFP (Sigma-Aldrich, G6539. 1:500 dilution), Chicken-GFP (AVES, GFP-1020. 1:500 dilution), Rabbit-GABA (Sigma-Aldrich, A2052, 1:500 dilution), Mouse-nc82 (Hybridoma Bank DSHB, Brunchpilot, 1:50 dilution). On the second day, tissues were washed for 4 × 20 min and then incubated in secondary antibodies. The secondary antibodies were all from Invitrogen and used at 1:200 dilution: Alexa Fluor 555 anti-Rabbit (A-21428), Alexa Fluor 488 anti-Mouse (A11001), Alexa Fluor 647 anti-Mouse (A-2123511031). After incubation, tissues were washed for 4 × 10 min. VNC and brains were mounted on a slide for imaging. An Olympus FV1000 microscope with 20X air lens or 40X oil-immersion lens was used for confocal imaging.
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8

Immunohistochemistry of Drosophila Eye-Antennal Discs

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Third-instar larval eye-antennal discs were dissected in phosphate-buffered saline (PBS), fixed in 4% paraformaldehyde for 30 min, washed in PBS + 0.1 or 0.3% Triton X-100 (PBT), and blocked in PBT + 1% bovine serum albumin (PBT/BSA). The tissues were incubated with the primary antibody in PBT/BSA overnight at 4°C. After washing off the primary antibodies, the tissues were incubated with the secondary antibodies in PBT for 1 hour at room temperature. After washing off the secondary antibodies, the samples were mounted in 80% glycerol or Vectashield (Vector Laboratories). For all eye imaginal disc experiments, we repeated the experiment at least twice with two independent biological samples from each genotype including the control genotype.
Antibodies used were as follows: mouse βGal (Sigma, 1:500), rabbit GFP (Invitrogen A11122, 1:500), mouse GFP (Invitrogen A11120, 1:500), rabbit Lgl (J. Knoblich, 1:500), mouse HA [Developmental Studies Hybridoma Bank (DSHB), 1:100], mouse N-intra (DSHB, 1:100), guinea pig Vha44 (M. Simmons, 1:100), rabbit Vap33 (H. Bellen, 1:1000), mouse Crb (DSHB, 1:50), and rabbit Patj (M. Bhat, 1:500). Secondary antibodies were as follows: anti-mouse Alexa 488, 568, 633, and 647; anti-rabbit Alexa 488, 568, 633, and 647; and anti– guinea pig Alexa 568. All secondary antibodies were used at a dilution of 1:500. DNA was stained with 1 µM DAPI.
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