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Agilent 6520 quadrupole time of flight mass spectrometer

Manufactured by Agilent Technologies
Sourced in United States

The Agilent 6520 quadrupole time-of-flight mass spectrometer is a high-performance analytical instrument designed for sensitive and accurate mass analysis. It combines the resolving power of a quadrupole mass filter with the high-speed detection capabilities of a time-of-flight mass analyzer. The instrument is capable of performing precise mass measurements and structural elucidation of various chemical compounds.

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6 protocols using agilent 6520 quadrupole time of flight mass spectrometer

1

Profiling Antiglycation Compounds

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For antiglycation activity, a POLAR star galaxy spectrophotometer (BMG Labtech, Australia) was used to measure AGE fluorescence. Spectral analysis of compounds present in the samples was conducted using the Agilent 1200 HPLC system coupled with an Agilent 6520 quadrupole time-of-flight (QTOF) mass spectrometer. Further molecular docking tools were used to identify the most relevant compounds, and ADMET test tools were used to identify the toxicity level of these identified compounds.
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2

LC-MS Analysis of Metabolites

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LC-MS analyses were performed on an 1200 HPLC system coupled to an Agilent 6520 Quadrupole-Time of Flight (Q-TOF) mass spectrometer (Agilent Technologies, USA). A Zorbax Eclipse Plus C18 column with dimensions of 150 mm × 2.1 mm and 5.0 μm particle size was used. The temperature of column was set at 30 °C. A gradient elution was applied using 0.1% formic acid in water as solvent (A) and 0.1% formic acid in acetonitrile as solvent (B). The following solvent gradient was applied: from 2% B to 12% B within 2 min, to 15% B within 6 min, to 60% B within 9 min, to 100% B within 9 min, to 2% B within 1 min, and hold for 5 min. The flow rate was set at 0.25 mL min−1 and 1–5 μL of samples were injected. Mass resolution was set to 10 000. The electrospray and fragmentor voltages were set at 3500 and 120 V, respectively. The gas temperature was maintained at 350 °C. The drying gas (nitrogen) flow rate and nebulizer gas (nitrogen) pressure were 8 L min−1 and 30 psi, respectively. MS/MS product ion scans were carried out at a collision energy of 5–45 V. Ultra-high-purity nitrogen was used as the collision gas. The scan was performed in positive mode in the m/z range 25–1000 with the scan time of 0.77 second.
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3

Metabolomic Analysis Using LC-QTOFMS

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Metabolomic analysis was performed on a LC/MS system consisting of an Agilent 1290 Infinity Liquid Chromatography (LC) (Agilent, Santa Clara, CA, USA) coupled to an Agilent 6520 quadrupole time-of-flight mass spectrometer (QTOFMS) (Agilent). An Acquity T3 C18 column (Waters, Milford, MA, USA) was used for chromatographic separation. The mobile phases were 0.1% formic acid in water (A) and 0.1% formic acid in acetonitrile (B); LC gradient was run from 2% B to 90% B, 0–60 min; 90% B to 90% B, 60–70 min; 90% B to 2% B, 70–75 min; and 2% B to 2% B, 75–90 min. The LC-MS system was operated with an electrospray ionization (ESI) source; both positive ion and negative ion modes were performed. MS1 data were recorded for the mass range of 80–1000 at 1.03 scan/s, while MS/MS spectra of m/z 50–1000 collected at 1.4 scan/s. QA/QC details can be seen in the supplementary information.
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4

Metabolomics profiling of biological samples

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Analyses on Agilent 1290 liquid chromatography system coupled to Agilent 6520 quadrupole time-of- flight mass spectrometer as previously described [29 (link)]. The mass spectrometer, equipped with a dual- electrospray ionization source, was run in negative ion and then positive ion mode. The scan range was 50–1600 m/z. Source settings; drying gas flow rate: 11 L/min; nebulizer: 40 pounds per square inch gauge; gas temperature: 350 °C; capillary voltage: 3000 V (neg), 2500 V (pos). Metabolites were identified using MS/MS, with fragments compared against Agilent Metlin Metabolomics Database and Library. Liquid chromatography–mass spectrometry data were analyzed using Agilent Qualitative Analysis B.07.00, El-MAVEN (Elucidata), and Metabolomic Analysis and Visualization ENgine (MAVEN). Five biological replicates completed in each treatment group.
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5

Analysis of N-Glycans by nanoHPLC-chip-Q-TOF-MS/MS

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To allow unambiguous identification of oligosaccharides, samples were analyzed using an Agilent 6200 series nanoHPLC-chip-Q-TOF-MS/MS, consisting of an autosampler, which was maintained at 8 °C, a capillary loading pump, a nanopump, HPLC-chip-MS interface and an Agilent 6520 Quadrupole-Time Of Flight mass spectrometer. The chip and gradient were the same as for the nHPLC-chip-TOF-MS analysis. N-glycans were subjected to collision-induced dissociation (CID) fragmentation with nitrogen as the collision gas using a series of collision energies that were dependent on the m/z values of the oligosaccharides. The collision energies correspond to voltages (Vcollision) that were based on the equation: Vcollision = m/z (1.8/100 Da) Volts - 2.4 V, where the slope and offset of the voltages were set at 1.8/100 Da and -2.4, respectively. All data was acquired in the positive ionization mode.
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6

HILIC-QTOF-MS Metabolite Analysis

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An Agilent 1260 chromatography with Agilent 6520 Quadrupole-Time-Of-Flight mass spectrometer (Agilent Technologies) and 150×1mm Luna NH2 hydrophilic interaction chromatography column (Phenomenex) was used for chromatographic separation (Lorenz et al., 2011 (link)). The mass spectrometer was operated in negative ESI mode, and parameters were set as listed: Gas temp: 350°C, drying gas: 10 l/min, nebulizer: 20 psi; Mobile phase A: 5 mM ammonium acetate in H2O with pH adjusted to 9.9 with ammonia; Mobile phase B: 100% acetonitrile; Flow rate: 0.075 ml/min; Solvent gradient: 0 min, 80% B, 15 min, 0% B, hold 5 min. Data were processed by MassHunter workstation software, version B.06.
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