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20 protocols using picrosirius red staining kit

1

Vascular and Cardiac Remodeling Assessment

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5 µm lung and heart sections were cut, from paraffin blocks and mounted on Superfrost® microscope slides (Sigma-Aldrich, Irvine, UK).
Vascular thickening was determined by smooth muscle actin antibody (ab5694, Abcam, Cambridge, UK) staining, thickening was characterised by an increase in the vessel wall diameter of more than 50% of the arterial wall or complete occlusion. The number of remodelled vessels over the total number of vessels present in a lung section was determined. Sections were analysed in a blinded manner.
Heart sections were stained using a common regressive Haemotoxylin and Eosin (H&E) staining methodology to determine gross morphology and cardiomyocyte cross-sectional area. High-power images of five areas randomly distributed across ventricles were analysed by ImageJ software. Mean cardiomyocyte size was determined by measuring the cross sectional area of minimally 20 transversally cut cardiomyocytes at the level of the nucleus.
Picro-sirius red staining was used for analysis of cardiac fibrosis using a Picro-sirius red staining kit (Abcam, Cambridge, UK) as per manufacturer's instructions. High-power images were acquired of five random areas per ventricle. Using ImageJ IHC tool, the percentage tissue area positive for collagen (pink) was determined.
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2

Histological Analysis of Liver and Adipose

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Liver and adipose tissues were fixed in 4% phosphate buffered paraformaldehyde and paraffin-embedded. Three μm sections from 5 mice in each experimental group were stained with Haematoxylin and Eosin (H&E). One representative micrograph of each group is shown, and three sections of adipose tissue depots from each mouse were used for quantification of mean cell diameter. Picrosirius red staining kit (ab150681) was performed on paraffin sections as described by the manufacturer (Abcam, Cambridge, UK) (n = 5).
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3

Histological Analysis of Liver Tissue

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A liver specimen (approximately 5 mm × 5 mm) taken from the right lobe near the portal vein was fixed in 4% (w/v) paraformaldehyde, dehydrated, and embedded in paraffin as previously described.75 The paraffin-embedded liver sections (5 μm) were deparaffinized, rehydrated, and stained with H&E, Sirius Red (Picro Sirius Red Staining Kit, ab150681; Abcam, Cambridge, UK), or Trichrome Stain (Masson’s) (SDHT15; Sigma-Aldrich, Burlington, MA) according to the manufacturer’s instructions. For Oil Red O staining, liver embedded in optimal cutting temperature compound (OCT compound) was immediately frozen on dry ice. Frozen sections (7 μm) were obtained using a Leica CM 1900 Cryostat (Leica Biosystems, Nussloch, Germany). Rehydrated sections were rinsed with 60% isopropanol and stained for 20 minutes with 0.3% Oil Red O solution, followed by rinsing 3 times in 60% isopropanol and twice in double-distilled water. Slides were further counterstained with hematoxylin and mounted.
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4

Lung Tissue Histology Protocol

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A segment of the left lung was fixed in Histofix (Histolab) and embedded into paraffin and sectioned (3 µm) with a microtome. The tissue sections were placed on slides (Superfrost Plus; Fisher Scientific) and deparaffinized in serial baths of xylene and ethanol followed by staining using Mayer hematoxylin and 0.2% eosin (Histolab) or picrosirius red staining kit (Abcam, Cambridge, United Kingdom). The stained slides were imaged using an Olympus BX60F microscope with an SC50 camera.
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5

Quantifying Collagen Deposition in Liver

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Sirius Red staining was performed using the Picro–Sirius Red Staining Kit (Abcam, Cambridge, UK) to evaluate collagen deposition in liver tissues. Collagen deposition was also quantified using a hydroxyproline assay kit (BioVision, Milpitas, CA) according to the manufacturer's protocol.
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6

Histological Analysis of Epididymal Adipose

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H&E and Picrosirius Red staining (Picrosirius Red Staining kit (Abcam, Cambridge, UK)) were performed on epididymal adipose tissue. Representative images were taken at 20× magnification on a Nikon E600. For adipocyte size, adipocytes from 20× images were traced and analyzed, using the MRI_Adipocytes_Tool macro for Image J software (NCBI)(Parlee et al. 2014).
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7

Quantifying Hepatic Collagen Deposition

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Sirius red staining was performed using the Picro–Sirius Red Staining Kit (Abcam, Cambridge, UK) to evaluate collagen deposition in liver tissues. For collagen deposition determination, a series of 5 randomly selected fields from each slice were visualized and quantified using ImageJ 1.48v software (National Institutes of Health, Bethesda, MD, USA). To detect the level of hepatic hydroxyproline, a specific component of collagen, a hydroxyproline assay kit (BioVision, Milpitas, CA, USA) was used, according to the manufacturer’s protocol.
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8

Quantitative Analysis of Lung Collagen

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Collagen deposition in the lungs was visualized using a Picro Sirius Red staining kit (Abcam). Mice were transcardially perfused with PBS; their lungs were removed, fixed with 4% paraformaldehyde, immersed in sucrose solution, and embedded in OCT compound. Cryostat sections of 15 µm were prepared. The frozen sections were air‐dried, washed three times with PBS (for 5 min each), and stained with Sirius Red. The images were taken by a DM IL microscope (Leica). Hydroxyproline in lungs was measured using a hydroxyproline colorimetric assay kit (BioVision). In brief, lungs were homogenized in 1 mL distilled water and hydrolyzed with 12 m HCl at 120 °C for 3 h. Then, 10 µL aliquots were added to each well of a 96‐well plate, and the solutions were evaporated under vacuum. The samples were incubated with Chloramine T and DMAB solutions for 1.5 h at 60 °C, and absorbance at 560 nm was determined using a microplate reader (Synergy HT, BioTek, Winooski, VT, USA).
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9

Collagen Content Analysis in Pancreatic Cancer

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To evaluate the collagen content in clinical samples (T142 Pancreatic cancer tissue array, Biomax, USA), hematoxylin and eosin (H&E) as well as collagen staining (Picro Sirius Red Staining Kit, Abcam, USA) were performed on pathologically diagnosed separate samples in the tissue microarray. All tissues in the repository are collected with donor consent under HIPPA approved protocols.
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10

Picro-Sirius Red Staining of Collagen

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4–6 μm thick sections were deparaffinized and rehydrated using xylene, 100% ethanol, 95% ethanol, and 70% ethanol for 3 min each and stained using Picro-Sirius Red staining kit (Abcam, Cambridge, MA). Picro-Sirius Red solution was applied to completely cover the tissue section and incubated for 1 hour and then rinsed twice in acetic acid solution and absolute alcohol. Sections were then dehydrated by dipping twice in absolute alcohol and then mounted with Eukitt quick hardening mounting medium (Sigma-Aldrich, St. Louis, MO). Picro-Sirius Red stains collagen 1 and collagen 3 fibers in the tissue section. Staining of collagen fibers was assessed based on five 20x magnification fields per animal per group in a blinded fashion using Zeiss 510 microscope (Carl Zeiss, Thornwood, NY). Percent of fibrosis was calculated based on the intensity of Sirius Red staining using ImageJ (NIH, Bethesda, MD).
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