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Zen 2.3 sp1 basic software

Manufactured by Zeiss
Sourced in Switzerland

ZEN 2.3 SP1 basic software is a core application for Zeiss microscopes. It provides essential functionality for image acquisition, processing, and management. The software enables users to capture, view, and analyze images from Zeiss microscope systems.

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2 protocols using zen 2.3 sp1 basic software

1

Mitochondrial Imaging with 5-ALA and Ko143

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The cells were seeded on glass bottom 35‐mm dishes (MatTek Corp., Ashland, Massachusetts) containing 2 × 105 cells per dish and incubated overnight. The next day, Ko143 (1 μM) was added to cells 1 hour prior to 5‐ALA addition (1.5 mM ALA, 1 hour or 4 hours) and maintained in the respective groups until imaging. The mitochondrial probe MitoTracker Green FM (100 nm) was added to the cells 15 minutes prior to live cell imaging. The cells were examined with a Zeiss LSM 880 Airyscan microscope (Carl Zeiss MicroImaging GmbH, Jena, Germany), equipped with an Ar Laser Multiline (458/488/514 nm), a DPSS 561 10 (561 nm), a Laser diode 405‐30 CW (405 nm), and a HeNe Laser (633 nm). The objective used was a Zeiss plan‐Apochromat 63xNA/1.4 oil DICII. Image acquisition, processing and analysis were performed with ZEN 2.3 SP1 basic software (Carl Zeiss), ZEN 2.3 Blue (Carl Zeiss), or Imaris 7.7.2 (Bitplane AG, Zürich, Switzerland). The Pearson's colocalization measurements were performed in ZEN 2.3 Blue with Costes' automatic thresholding.
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2

High-resolution Imaging with Zeiss Airyscan

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The cells were examined with a Zeiss LSM 880 Airyscan microscope (Carl Zeiss MicroImaging GmbH, Jena, Germany), equipped with an Ar-Laser Multiline (458/488/514 nm), a DPSS-561 10 (561 nm), a Laser diode 405-30 CW (405 nm), and a HeNe-laser (633 nm). The objective used was a Zeiss plan-Apochromat 63xNA/1.4 oil DICII. The images were acquired with the Airyscan detector with a voxel size of 0.035 × 0.035 × 0.144 µm for high resolution imaging and super-resolution processing resulting in a final resolution of 120 × 120 × 350 nm. Image acquisition and processing were done with the ZEN 2.3 SP1 basic software (Carl Zeiss), or with ZEN 2.3 Blue (Carl Zeiss).
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