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3 protocols using ab54563

1

Western Blot Analysis of Cell Signaling

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Transfected cells were collected and lysed in lysate buffer (Beyotime, Beijing, China). Protein concentration was determined using bicinchoninic acid (BCA) protein assay kit (Pierce, Rockford, IL, USA), and protein samples were separated on sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred to nitrocellulose membrane (Whatman, Dassel, Germany). After blocking with 5% nonfat milk for 2 h, the membranes were incubated with the primary antibodies overnight, and horseradish peroxidase-conjugated secondary antibody was used for 2 h. Finally, protein bands were visualized using the enhanced chemiluminescence (ECL) reagent (GE Healthcare, Little Chalfont, UK), and optical density was calculated by ImageJ software version 1.49 (National Institutes of Health, Bethesda, MD, USA).
Antibodies used were as follows: actin (C-2) was purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). p27 (ab54563), p21 (ab80633), Bcl-2 (ab692), Bax (ac32503), cleaved caspase 3 (ab32042), procaspase 3 (ab2171), and horseradish peroxidase-conjugated anti-mouse (ab6785) and anti-rabbit antibodies (ab6721) were purchased from Abcam (Cambridge, MA, USA).
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2

Characterizing Multicellular Tumor Spheroids

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Fixed MTS where embedded in paraffin and sectioned (5 μm). For the characterization of the MTS, the sections were processed and evaluated using different techniques. Staining was performed using 4′, 6-diamidino-2-phenylindole (DAPI) or Mayer’s hematoxylin (H&E) to visualize nuclei or the general structure of the MTS. Parallel incubation with primary antibodies diluted in bovine serum albumin was conducted using a 1:200 dilution for anti-Ki67 and 1:100 for anti-p27Kip1 and anti-HIF 1-α. Antibody binding was then visualized using the standard avidin-biotin-peroxidase complex technique (#K0690 LSAB™+ Kits, Universal Dako, Sao Paulo, Brazil) counterstained with Mayer’s hematoxylin. The antibodies used were, Anti-HIF 1-α (Hypoxia-inducible factor-1, AB3883 Upstate Millipore), anti-p27Kip1 (cyclin-dependent kinase inhibitor 1B, ab54563 abcam) and anti-Ki67 (marker of proliferation Ki-67, AB9260 Millipore Chemicon, Jaffrey, USA).
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3

Quantification of Cell Signaling Proteins

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The cells were collected in standard RIPA buffer (Thermal) 48 h after transfection with miR-340 mimics or inhibitors. The cell protein concentrations were evaluated by using a BCA protein assays kit (Novogen, Darmstadt, Germany) according to the manufacturer’s instructions. The protein samples were separated on 10–12% sodium dodecyl sulfate (SDS)-PAGE gels and transferred onto nitrocellulose membrane (Millipore, USA). After blocking with 5% nonfat dry milk for 2 h at room temperature, the membranes were probed with the following primary antibodies overnight at 4°C: anti-p27 kinase inhibition protein (KIP) 1 antibody (ab54563, Abcam), anti-p21 antibody (ab7960, Abcam), anti- B-cell lymphoma (Bcl)-2 antibody (ab7973, Abcam), anti-Bax antibody (2772, Cell Signaling Technology), anti-pro-Caspase 3 antibody (ab32150, Abcam), and anti-active-Caspase-3 antibody (ab2302, Abcam). The membranes were then washed with Tris Buffered Saline with Tween (TBST) and incubated with appropriate horseradish peroxidase (HRP)-conjugated secondary antibodies with GAPDH as a lysate loading control. Immunoreactive protein bands were visualized with enhanced chemiluminescence (ECL) reagent (GE Healthcare).
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