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Stata software 13

Manufactured by StataCorp
Sourced in United States

STATA software 13 is a comprehensive statistical software package developed by StataCorp. It is designed for data management, statistical analysis, and visualization. STATA software 13 provides a wide range of tools and functionalities for researchers, analysts, and professionals in various fields.

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22 protocols using stata software 13

1

Probit Model for 25(OH)D Deficiency

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Data statistical analysis was performed with Stata software13. A probabilistic nonlinear model was performed with a dichotomous response (people ≥ 65 years having or not having 25(OH)D deficiency), and a regressor that refers to a probit model. Average marginal effects were calculated for each interaction, and likelihoods were predicted. The model specification is: yi=F+β0+β1Sexoi+β2DescendenciapueblosOi+β3Zonai+β4LuzSolari+0519Regioni+εi
where F(.) corresponds to the cumulative distribution function assumed to be probit, which is a link between the determinants and the probability of presenting 25(OH)D deficiency; thus, the probit model to be estimated corresponds to: Probit(p)=2erf-1(2p-1)
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2

Insecticide Resistance Trends in African Malaria Vectors

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Data from the same sentinel site location district and village and date of sample collection were combined for each species across all bioassays. Percent mortality and 95% confidence intervals for the WHO susceptibility tests were calculated by the binomial exact method using STATA software 13 (Stata Corp LP, College Station, TX, USA). Trend analyses were performed for all tested insecticides. To estimate insecticide resistance trends from 2004 to 2020, aggregated mosquito mortalities from each sentinel site and time were performed using regression analysis of mortality versus the Julian dates of bioassays using STATA software. Only insecticides that were tested across multiple survey years have been included in the analysis. A linear regression model was fitted for species composition as the dependent variable against time (years).
The association between resistance markers and phenotypic resistance was analysed using Chi-square tests on a subsample of An. gambiae and An. arabiensis. The subsample was weighted by the inverse of the sampling fraction i.e., subsample/total collected to represent the relative proportion in the total population. The kdr genotype frequencies among dead and live An. gambiae s.l. in susceptibility test across different survey years and clusters were compared using the Genepop software, version 4.0.
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3

Trajectories of Urban and Rural Depression

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The latent class growth model, which is a model used to describe the development feature of samples in a certain period and classify the development feature, was used to illustrate and classify the developmental trajectories of urban and rural depression symptoms in this study. Small values of Akaike Information Criterion (AIC), Bayesian Information Criterion (BIC) and adjusted Bayesian Information Criterion (aBIC) are preferred in selecting the number of latent classes [37 (link)]. After determining the trajectory groups, Chi-square analysis was used to test the differences in respondents’ characteristics among depression trajectories groups within urban and rural areas. Then, multinomial logistic regression was used to explore the association between trajectories of depression symptoms and baseline multimorbidity, physical disability and other independent variables in urban and rural areas.
Mplus 8.0 was used to apply the latent class growth model, and STATA software 13 was used to execute the multinomial logistic regression and Chi-square analysis, with statistical significance at p < 0.05.
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4

Evaluating HIV Treatment Outcomes

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Baseline socio-demographic and clinical characteristics (gender, age, year of HIV diagnosis, year of enrolment, CD4+ T-cells, VL) were included. The outcome of treatment was assessed with both on-treatment and intention-to treat (ITT) analysis. In the ITT analysis, ART failure was defined as either of detectable VL (>1000 copies/ml), death, lost-to-follow-up (LTFU) and missing data. Descriptive analyses included frequencies for categorical variables, and mean and standard deviation or median and interquartile range for continuous variables. Chi-square test or Fisher’s Exact Test was used to test differences between categorical variables. Independent t-test, Mann-Whitney, Anova and Kruskal-Wallis test assessed differences of numerical variables between two or more categories. General linear (GLM) and logistic regression models with backward selection were used for the multivariable analysis of immunological and virological responses. Beta coefficients and Odds Ratios (OR), 95% Confidence interval and p-values were used to present the regression models results. P-values < 0.05 were considered significant. Data analysis was done by the STATA software 13 (Stata Corp. College Station, USA) and IBM SPSS Statistics, version 22 (IBM Corp).
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5

Epidemiological Analysis of Predictors

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Data was summarized with descriptive statistics (mean, median, standard deviation, percentiles for numerical variables, frequencies and percentages for categorical variables). Cross tabulations with Chi-Square or Fisher test were used to test for un-adjusted relationship between outcomes and categorical independent variables. For independent numerical variables t-test, Wilcoxon rank sum test and Kruskal Wallis test were used to compare mean and medians in two and more groups respectively, using Bonferroni correction for multiple comparisons for post-hoc tests.
A binary logistic regression model was used to identify significant predictors. For all variables a screening cross-tabulation was made to look for risk factors being of interest. Variables with P-value less then 0.2 and all the basic demographic variables were included in a backward (with 0.20 as significance level for removal from the model) stepwise logistic regression model. Crude and adjusted odds ratios (OR) with their 95% confidence intervals were presented. P-value <0.05 was considered significant in the final models.
Data analysis was performed using the STATA software 13 (Stata Corp. College Station, Texas, USA).
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6

Examining the Impact of HRPTs on MSD Treatment Compliance

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Continuous variables are reported as means ± standard deviations. Categorical variables are presented as frequencies (%). One-way ANOVA was used to compare continuous variables, while the Chi-square test was used to compare categorical variables between groups. Ordered probit regression was applied to measure the effects of HRPTs and other potential confounding variables on MSD treatment compliance. The heterogeneity of the effects of HRPTs on treatment compliance was examined by grouping ordered probit regression according to poverty status.
We used the STATA software 13 to calculate the results. Statistical significance was set at p-value < 0.05.
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7

Rabbit Model of Muscle Regeneration

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Continuous variables are expressed as mean (SD) or median (interquartile range [IQR]) according to their distribution and analyzed using the Shapiro-Wilk normality test. Differences among the means were analyzed using analysis of variance, and the Bonferroni test was performed for pairwise comparison between group means. For non-normal data distribution, the Kruskal-Wallis test was used. Absolute and relative frequencies were used to report categorical variables. Differences were calculated using chi-square test. Statistical analyses were performed using Stata Software 13 (StataCorp, College Station, Texas). Results with P values < .05 were considered statistically significant. Because there were no previous data to suggest the effect size, a sample size was not calculated for this research study. It was estimated that 12 rabbits were an adequate sample.
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8

Adherence Determinants and Reliability Assessment

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Descriptive analyses included frequencies for categorical variables and mean, and standard deviation for continuous variables. Anova and chi-squared tests were used to compare numerical and categorical variables among the years of survey. Logistic regression modelling was used to assess determinants of optimal adherence (defined as no ART doses missed in the past week) and determinants of improved adherence within patients. Odds Ratios (OR), 95% Confidence interval and p-values were used to present the logistic regression model results. P-values < 0.05 were considered significant. Test-retest reliability was analyzed by calculating proportion of agreement, intra-class correlations (items 1, 2 and 3), κ (items 4b and d) and weighted κ (items 5 and 6) [21 ]. The agreement between patients’ responses on item 4a (on ART or not) and their recorded treatment status in InfCareHIV was calculated for all participants in the 2014 cohort (n = 1,321). Data analysis was performed using the STATA software 13 (Stata Corp. College Station, USA) and IBM SPSS Statistics, version 22 (IBM Corp).
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9

Comprehensive Statistical Analysis of Data

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To describe the data, mean and, standard deviation or number (percentage) were used. Data analysis was performed using likelihood ratio chi-square, a two-sample test of proportions, independent t-test, and binary logistic regression. All tests were performed at a significance level of 0.05 using Stata software 13 (Stata Corp, College Station, TX, USA).
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10

Determinants of Vaccine Hesitancy Exploration

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We carried out a descriptive analysis of the data. We studied the relationship between VH and explanatory variables using the chi-square or Fisher’s exact tests. After verifying that the data were normally distributed, we analysed age and years of experience as continuous variables using the Student’s t-test. We fitted logistic regression models using the variables statistically significant in the bivariate analysis and adjusted for sex, years of experience and offspring. The variables included in the models are described in Tables 2 and 3. We computed the adjusted odds ratios (aOR) and their 95% confidence intervals (CI). We compared the models based on the likelihood ratio test and chose the model providing the most information with the fewest variables.
We analysed “do not know/no response” (DK/NR) responses and the missing values together. Missing values accounted for less than 5%. When the percentage exceeded 5%, data were analysed by including and excluding them as a category. As missing values did not affect the results, we excluded them from the analysis. Statistical significance was set at α = 0.05. The analysis was conducted using Stata software 13.0 (Stata Corp. 2013. Stata Statistical Software: Release 13. College Station, TX: StataCorp LP).
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