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Tris saturated phenol chloroform isoamyl alcohol

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Tris-saturated phenol-chloroform-isoamyl alcohol is a laboratory reagent used for the extraction and purification of nucleic acids, such as DNA and RNA, from biological samples. It is a mixture of phenol, chloroform, and isoamyl alcohol, and is designed to effectively separate nucleic acids from proteins and other cellular components.

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5 protocols using tris saturated phenol chloroform isoamyl alcohol

1

Cephradine and Gentamicin Antibiotic Mixture Protocol

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Cephradine capsules (batch number: 151101) were purchased from Suzhou Chung-Hwa Chemical & Pharmaceutical Industrial Co. Ltd., and gentamicin sulfate (batch number: 5150307) was purchased from Yichang Pharmaceutical Industrial Co. Ltd. The two antibiotics were then prepared into a mixture at a concentration of 62.5 g·L-1[26 (link)]. The DNA extraction reagents (such as Proteinase K, lysozyme, Tris-saturated phenol-chloroform-isoamyl alcohol (25:24:1) and TE buffer) were purchased from Beijing Dingguo Changsheng Biotechnology Co. Ltd., and prepared in the lab (such as 10% SDS, chloroform-isoamyl alcohol (24:1), 5 mol·L-1 NaCl, 0.1 mol·L-1 PBS and CTAB/NaCl). D. hansenii, which was provided by the laboratory and shaken at 28°C for 36 hours after being inoculated into liquid Potato Sucrose medium in a 300 mL erlenmeyer flask. The cells were then gathered by centrifugation at 2000×g for 4 minutes after washed 1∼2 times repeatedly with sterile stroke-physiological saline solution. The above cells were diluted to 1010 mL-1 with sterile storke-physiological saline solution eventually after being counted by hemocytometer, and stored at 4°C for subsequent experiments[27 (link)].
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2

Antibiotic Mixture Preparation and Storage

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Cephradine capsules (product batch number: 110804) and gentamicin sulfate injection (product batch number: 5120106) were purchased from Suzhou Chung-Hwa Chemical & Pharmaceutical Industrial Co., Ltd. and Yichang Renfu Pharmaceutical Co., Ltd., respectively. An antibiotic mixture was prepared at a concentration of 62.5 g L−1 with sterile saline according to the ratio of 1 : 2 (i.e., 6 gentamicin (2 mL/branch) + 3 cephalosporins (0.25 g/grain)) and stored at 4°C [16 (link), 17 ]. Protease K, Tris-saturated phenol-chloroform-isoamyl alcohol (25 : 24 : 1), lysozyme, and TE buffer were purchased from Beijing Ding Guo Biotechnology Co., Ltd. Other reagents were prepared in the lab.
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3

Isolation and Identification of Kunming Mouse DNA

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Animals: Twelve mature specific pathogen-free Kunming mice (six males and six females) weighing 18-22 g were purchased from Hunan Slaccas Jingda Laboratory Animal Co., Ltd (Hunan, China) with license number SCXK (Xiang) 2013-0004.
Reagents: Chemicals were purchased from Yichang Renfu Pharmaceutical Co., Ltd. and Suzhou Zhonghua Pharmaceutical Industry Co., Ltd., including gentamicin sulfate for injection and cephradine capsules. Solutions including protease K, lysozyme, Tris saturated phenol-chloroform-isoamyl alcohol (25:24:1), TE buffer and acetone were purchased from Beijing Ding-Guo Biotechnology Co., Ltd. Other solutions, such as 0.1 mol/L phosphate buffer solution (PBS), hexadecyl trimethyl ammonium bromide (CTAB)/NaCl, 10% sodium dodecyl sulfate (SDS), 5 mol/L NaCl, chloroform-isoamyl alcohol (24:1), 3 mol/L sodium acetate and 70% ethanol, were prepared in the laboratory.
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4

DNA Extraction with Phenol-Chloroform

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Tris-saturated phenol–chloroform-isoamyl alcohol (25:24:1), lysozyme, proteinase K, chloroform, isoamyl alcohol, acetone, and TE buffer were purchased from Beijing Dingguo Biotechnology Co. Ltd. 10% sodium dodecyl sulfate (SDS), 0.1 mol/L phosphaTE buffer solution (PBS) buffer, 5 mol/L NaCl, chloroform-isoamyl alcohol (24:1), cetyl trimethyl ammonium bromide (CTAB)/NaCl, 3 mol/L sodium acetate and 70% anhydrous ethanol, were prepared in the laboratory.
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5

Bacterial Viability Assay Protocol

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Acetone, Hunan Huihong Reagent Co., Ltd.; Fluorescein diacetate (FDA) and Ortho-nitrophenyl beta-D-galactopyranoside (ONPG) were purchased from Shanghai Yuanye Biotechnology Co., Ltd. Proteinase K, TE buffer, lysozyme, chloroform:isoamyl alcohol (24:1), Tris-saturated phenol:chloroform:isoamyl alcohol (25:24:1), and Acetone were purchased from Beijing Dingguo Biotechnology Co., Ltd. 0.1 mol/L PBS buffer, 10% SDS, 5 mol/L NaCl, CTAB/NaCl, 3 mol/L sodium acetate, and 70% anhydrous ethanol, etc. were configured by the laboratory. FDA stock solution configuration: add 2 mg of FDA to 1 mL of Acetone solution, mix well to obtain 2 mg/mL of FDA stock solution, and store in the dark at −20°C. FDA reaction solution configuration: the FDA stock solution was added to PBS buffer (pH = 7.6) for a final FDA concentration of 10 μg/mL (Li et al., 2023 (link)).
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