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7 protocols using metamorph nx software

1

Galvanotaxis Cell Migration Assay

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EF-induced cell migration experiments were performed as described previously [34 (link)]. Briefly, direct current was applied through agar-salt bridges via Ag/AgCl electrodes in Steinberg’s solution (consisting of 58 mM NaCl, 0.67 mM KCl and 0.44 mM Ca(NO3)2, 1.3 mM MgSO4 and 4.6 mM Tris base, pH 7.4) to pooled medium on either side of the galvanotaxis chamber. Cells were exposed to 0–100 mV/mm direct current EF for 1 h. Cell behavior was observed with a Carl Zeiss Observer Z1 inverted microscope with a Photometrics QuantEM EMCCD camera (Photometrics Inc., Tucson, AZ, USA) and MetaMorph NX software (Molecular Devices, Sunnyvale, CA, USA), and serial time-lapse images were captured. Cell migration was analyzed to determine directedness (cos θ) and track speed by using ImageJ software (NIH, Bethesda, MA, USA) with MTrackJ and Chemotaxis tool plugins. Briefly, trajectories of cells were pooled to make composite graphs. The directedness of migration was assessed as cos θ, where θ is the angle between the EF vector and a straight line connecting start and end positions of a cell. A cell moving directly to cathode would have a directedness of 1; a cell moving directly to the anode would have a directedness of −1. A value close to 0 represents random cell movement. Speed is the total length travelled by the cell divided by time.
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2

Evaluating Cell Area Changes in MOVAS Cells Exposed to Uric Acid

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The area of MOVAS cells was evaluated after 24 and 48 h exposure to UA (6–12 mg/dL) and compared with that of CTR. In brief, cells grown on chamber slides (EZ chamber slides; Merck Group) were fixed with 2% paraformaldehyde, stained with Hematoxylin–Eosin and photographed with a Leica Microsystems microscope (GmbH Wetzlar, Germany) (40× magnification). Images were then analyzed using MetaMorph® NX software (Molecular Devices): the areas of randomly selected single cells were defined using the cursor and automatically estimated. The median values were calculated upon measurement of 100 cells/condition.
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3

Immunofluorescence Staining of AGR2 in Cells

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DMGT and CF41.Mg cells were seeded onto coverslips placed in a 12-well plate and grown to 50–70% confluency. Cells were fixed with 4% paraformaldehyde containing 2% sucrose in 1× PBS at RT for 20 min and then permeabilized with 0.1% Triton X-100 for 3 min and blocked with BlockPROTM (Visual protein, Taipei, Taiwan) for 30 min. Cells were incubated with the AGR2 antibody (MA5-16244, Invitrogen, Thermo Fisher Scientific) at 1:100 dilution for 90 min at RT, followed by staining with secondary Alexa Fluor 488-conjugated goat-anti-mouse IgG (Molecular Probe, Thermo Fisher Scientific) at 1:200 dilution for 45 min. The nuclei were co-stained with 4′,6-diamidino-2-phenylindole (DAPI) at 0.1 µg/mL in 1× PBS. Coverslips were washed with 1× PBS between steps and finally mounted with Fluoro-Gel (Electron Microscopy Science, USA) on slides. Results were observed by using Leica DMI3000 Inverted Microscope (Leica, Wetzlar, Germany) equipped with a Zyla 5.5 mega pixel sCMOS camera (Andor Technology, Belfas, Ireland) and processed with MetaMorph® NX Software (Molecular Devices, San Jose, CA, USA).
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4

Immunofluorescent Staining of MHC Class II

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Macrophages were fixed with 4% paraformaldehyde for 15 min, followed by incubation of the cells in blocking buffer (Thermo Fisher Scientific, Waltham, MA, USA) for 30 min. Thereafter, the samples were stained with mouse anti-MHC class II (HLA-DP β1) antibody (Abcam, Cambridge, UK) in blocking buffer. Following overnight incubation at 4 °C, secondary AlexaFluor 488-conjugated goat anti-mouse IgG antibody (Thermo Fisher Scientific) in blocking buffer was added and incubated for 2 h. The samples were washed with phosphate-buffered saline (PBS) and imaged with a confocal laser-scanning microscope (Carl Zeiss, Oberkochen, Germany). Additionally, fluorescence intensity of HLA-DP β1 per cell was calculated by using MetaMorph NX software (Molecular Devices, Sunnyvale, CA, USA).
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5

Visualizing EGF Receptor Internalization

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A549 cells were incubated with NE (300 mU/ml) in serum-free DMEM for 20 min at 37 °C in the presence or the absence of NE inhibitor (100 μg/ml); medium was replaced; and cells were stimulated with GST-EGF (500 ng/ml) for 10 min. Total protein was extracted, and internalized GST-EGF was detected by Western blotting using anti-EGF antibody (catalog no.: ab184265; Abcam) and anti-GST antibody (catalog no.: 2622; Cell Signaling Technology).
pHrodo-conjugated EGF (pHrodo-EGF; Thermo Fisher Scientific) was used to visualize the binding of EGF to EGFR, according to the manufacturer’s instructions. Briefly, A549 cells were treated with NE (300 mU/ml) in the presence or the absence of NE inhibitor (100 μg/ml) for 20 min and then kept on ice for 10 min. Cells were incubated in Live Imaging Solution (Thermo Fisher Scientific) containing pHrodo-EGF (2 μg/ml), Hoechst 33342, 20 mM glucose, and 1% bovine serum albumin for 15 min at 37 °C. Images were captured using an EVOS M5000 Imaging System (Thermo Fisher Scientific). Fluorescence intensity of pHrodo-EGF per cell was calculated using MetaMorph NX software (Molecular Devices).
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6

Automated Quantitative Analysis of DAPI Nuclei

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Image acquisition was performed using an IX-81 fluorescence microscope (Olympus Corporation, Tokyo, Japan). Seven representative fields of each well were selected in a blinded and systematic procedure using 10× magnification. Automated quantitative determination of DAPI-positive nuclei was performed using the Cell Scoring module of Metamorph NX software (Molecular Devices LLC, Sunnyvale, CA, USA). Positive cells were selectively identified when having clear signal intensity above local background. Intensity thresholds were set blinded to sample identity and in a given experiment, identical parameters were used in all images analyzed. The parameters were minimally adjusted across the different independent experiments.
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7

Galvanotaxis Cell Migration Assay

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EF-induced cell migration experiments were performed as described previously [34 (link)]. Briefly, direct current was applied through agar-salt bridges via Ag/AgCl electrodes in Steinberg’s solution (consisting of 58 mM NaCl, 0.67 mM KCl and 0.44 mM Ca(NO3)2, 1.3 mM MgSO4 and 4.6 mM Tris base, pH 7.4) to pooled medium on either side of the galvanotaxis chamber. Cells were exposed to 0–100 mV/mm direct current EF for 1 h. Cell behavior was observed with a Carl Zeiss Observer Z1 inverted microscope with a Photometrics QuantEM EMCCD camera (Photometrics Inc., Tucson, AZ, USA) and MetaMorph NX software (Molecular Devices, Sunnyvale, CA, USA), and serial time-lapse images were captured. Cell migration was analyzed to determine directedness (cos θ) and track speed by using ImageJ software (NIH, Bethesda, MA, USA) with MTrackJ and Chemotaxis tool plugins. Briefly, trajectories of cells were pooled to make composite graphs. The directedness of migration was assessed as cos θ, where θ is the angle between the EF vector and a straight line connecting start and end positions of a cell. A cell moving directly to cathode would have a directedness of 1; a cell moving directly to the anode would have a directedness of −1. A value close to 0 represents random cell movement. Speed is the total length travelled by the cell divided by time.
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