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10 protocols using sulforhodamine b sodium salt srb

1

Phytochemical Evaluation of R. parviflora Bark

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The stem bark of R. parviflora was collected in Delta state, Nigeria in February 2014. The plant was authenticated by A.O. Oziokowith of University of Benin, Nigeria. A voucher specimen (INTERCEDD/1588) was deposited in the herbarium at the International Centre for Ethnomedicine and Drug Development (INTERCEDD), Enugu state, Nigeria. Trichloroacetic acid (TCA) was purchased from Fisher Scientific (Loughborough, United Kingdom) Carboplatin, glacial acetic acid, N,O-bis(trimethylsily) trifluoroacetamide (BSTFA) with 1% chlorotrimethylsilane (TMCS), palmatine chloride, pyridine, sulforhodamine B (SRB) sodium salt, Trypsin-EDTA solution, and Trizma base were purchased from Sigma Aldrich (Gillingham, United Kingdom). Fetal bovine serum (FBS), penicillin-streptomycin, and RPMI 1640 medium were purchased from Lonza (Visp, Switzerland).
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2

Cytotoxicity Assay of Carboplatin

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All the chemicals used were of analytical grade. n-Butanol, dichloromethane (DCM), ethyl acetate (EA), n-hexane, methanol (MeOH), and trichloroacetic acid (TCA) were products of Fischer Scientific, Loughborough, UK. Cell culture media, Roswell Park Memorial Institute (RPMI) 1640, 10% fetal bovine serum (FBS), l-glutamine, PENSTREP (50 μg/mL penicillin/streptomycin), and phosphate buffered saline (PBS) were obtained from Lonza (Basel, Switzerland). Trizma base, trypsin-EDTA solution, glacial acetic acid, dimethyl sulfoxide (DMSO), sulforhodamine B (SRB) sodium salt, trypan blue, and carboplatin were purchased from Sigma Aldrich (St. Louis, MO, USA) and Caspase-Glo 3/7, 8, and 9 assay kits from Promega, Southampton, UK.
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3

Biomimetic Oxidative Coupling Synthesis

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All compounds, including FZU-0025-065, were designed and synthesized through the last-stage functionalization of tetrahydro-β-carbolines (THβC) via biomimetic oxidative coupling catalyzation, and dissolved in DMSO. PI (propidium iodide, Cat #060M3521V) and sulforhodamine B (SRB) sodium salt (Cat#S9012) were purchased from sigma-Aldrich (St. Louis, MO).
The anti-AKT (#4685S), pAKT1 (#9018S), G3K3β (#9315), STAT3 (#9139S), pSTAT3 (#9131S), p21 (#2947S), α/β-Tubulin (#2148s), and pG3K3β (#9323S) were purchased from Cell Signaling Technology (Danvers, MA). The anti-CDK4 (#sc-749), CyclinB1 (#sc-245), ant GAPDH (#sc-32233) were purchased from Santa Cruz Biotechnology (Dallas, TX). And the anti-CyclinD1 (#A10757) and p27 (#610241) were purchased from ABClonal (Wuhan, CN) and BD Bioscience (San Jose, CA), respectively.
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4

Sulforhodamine B Colorimetric Assay for Cell Proliferation

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Cells were resuspended and seeded in 96-well plate with a density of 1000 cells per well. After the cells adherence, they were fixed with 10% trichloroacetic acid for at least 24 h, after which they were stained by Sulforhodamine B sodium salt (SRB) (Sigma, USA) for 30 min and washed three times by 1% (vol/vol) acetic acid. About 24 hours later after the plates were dry, 150 ul 10 mmol/L Tris were added to each well and the absorbance was measured at 510 nm31 .
For EDU staining, cells were seeded at 50–70% confluence and then stained with EDU at 37 °C for 2 hours. After fixed with 4% paraformaldehyde 15 min at room temperature, they were permeabilized with 0.3% triton X-100. The cells were subsequently added with click reaction buffer following with Hoechst staining for 10 min according to protocol (Beyotime, Shanghai, China).
Cell cycle analysis was performed with PI/RNase Staining Buffer (Becton, Dickinson, Franklin Lakes, NJ, USA) and detected by MUSE Cell Analyzer (Merck Millipore, Darmstadt, Germany) according to the manufacturer’s instructions. All experiment were tripled and the present data were presented mean ± SEM.
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5

SRB Assay for Carvedilol Cytotoxicity

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Cell viability for drug’s cytotoxicity wasdetermined using the SRB assay. 3,000 cells/well were seeded in a 96 well plate and allowed to attach overnight. The cells were then treated with a serial dilution of R- or S-carvedilol. The compounds were incubated for 72 hours before the cells were fixed overnight with 10% trichloroacetic acid and stained with Sulforhodamine B Sodium Salt (SRB) (Sigma Aldrich St. Louis, MO). The excess staining solution was removed with 1% acetic acid and allowed to dry. The dye was then dissolved with a 10% Tris Base solution and read using a ##Quant Microplate Reader (Biotek Instruments, Winooski, VD).
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6

Nannochloropsis gaditana Enzymatic Extraction

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The lyophilized microalgal biomass of Nannochloropsis gaditana (batch L3250520) was purchased from Cianoalgae SI (Gipuzkoa, Spain). Enzymatic solutions (Viscozyme® L, Celluclast® 1.5 L, Saczyme® Yield) were kindly donated by Novozymes A/S (Bagsvaerd, Denmark). The main components of the enzymatic preparations and their activities are reported in Table 2.
Chloroform, methanol, and ethanol were purchased from Fisher Scientific GmbH (Wien, Austria). Sodium hydrogen carbonate, potassium hydroxide, Triton X, and dimethylsulfoxide (DMSO) were purchased from Carl Roth (Karlsruhe, Germany). Cell culture media and respective supplements were obtained from Gibco Thermo Fisher Scientific (Waltham, MA, USA) and Szabo Scandic (Vienna, Austria). CellTiter-Blue (CTB) 10× concentrate was purchased from Promega (Waldorf, Germany). Sulforhodamine B sodium salt (SRB) and 2′,7′-dichlorofluorescin diacetate (DCFH-DA) were purchased from Sigma-Aldrich (München, Germany). Invitrogen CyQuant LDH Cytotoxicity Assay Kit was bought from Thermo Fisher Scientific (Waltham, MA, USA). Fatty acid methyl esters standard (Supelco 37 FAME Mix) was from Supelco (Bellefonte, PA, USA).
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7

Sulforhodamine B Assay for Cell Viability

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Cells were seeded in 96-well plates at a density of 1500 cells per well. After at least 6 hours, the first dish was fixed with 10% cold trichloroacetic acid for at least 24 hours, and the other plates were fixed every 24 hours. After washing and drying, the plates were stained with Sulforhodamine B sodium salt (SRB) (Sigma, USA) for 20 minutes and washed with 1% (vol/vol) acetic acid. After drying, 150 µL of 10 mmol/L Tris was added and the absorbance was measured using the microplate reader (Thermo Fisher, USA) at 562 nm. The results were analyzed with GraphPad Prism 8.0.2.
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8

Cell Proliferation Assay with SRB

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Cells were resuspended and seeded in 96-well plate with a density of 3000 cells per well. After 6 hours, the first plate was fixed with 10% cold trichloroacetic acid for at least 24 h. Then the other samples were collected in this way every 12 h. After all the samples were fixed, the plates were washed five times by submersion in tap water and excess water was removed. Then Sulforhodamine B sodium salt (SRB) (Sigma, USA) was added and stained them for 30 min. Next the plates were washed three times by 1% (vol/vol) acetic acid. After the plates were dry, 150 μl 10 mmol/L Tris was added to each well. Finally, the absorbance was measured at 562 nm in a microplate reader (Thermo Fisher, USA).
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9

Western Blot Antibody Protocol

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Rabbit anti-phospho-ERK1/2 (#4370), rabbit anti-ERK1/2 (#4695), rabbit anti-cyclin D1 (#2978), rabbit anti-phospho-p90RSK (#12032S), rabbit anti-RSK1 (#8408S), rabbit anti-phospho-Akt ser473 (#9271), rabbit anti-Akt (#9272), rabbit anti-vimentin (#5741), and rabbit α-SMA (#19245) antibodies were purchased from Cell Signaling Technology, Inc. (Danvers, MA, USA). Rabbit anti-MMP2 (#AB9015) and rabbit anti-MMP9 (#AB19016) antibodies were purchased from Merck Millipore (Burlington, MA, USA). Mouse anti-PCNA (#sc-56), mouse anti-OPN (#sc-73631), and mouse anti-KLF4 (#sc-393462) antibodies were purchased from Santa Cruz Biotechnology Inc. (Dallas, TX, USA). Rabbit anti-GAPDH (#LF-PA0018) was purchased from AbFrontier (Seoul, Korea). Mouse anti-α-tubulin antibody, crystal violet (#C0775), 2′,7′-dichlorodihydrofluorescein diacetate (DCF-DA), sulforhodamine B sodium salt (SRB; #S1402), trichloroacetic acid (TCA; #T6399), Mito-TEMPO (MT; #SML0737), and Rh1 were purchased from Sigma-Aldrich (St. Louis, MO, USA). Goat anti-rabbit IgG second antibody (#31460) and goat anti-mouse IgG second antibody (#31430) were obtained from Invitrogen (Carlsbad, CA, USA). Phosphate-buffered saline (PBS; #EBA-1105) was purchased from Elpisbio (Daejeon, South Korea). Diphenyleneiodonium chloride (DPI; #0504) and apocynin (APO; #4663) were obtained from Tocris Bio-science (Ellisville, MO, USA).
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10

Cell Viability Assay using SRB

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First, A549 and PC9 cells were seeded in several 96-well plates with about 4000 cells per well. After the cells adhered to the wall, one of the 96-well plates was fixed with trichloroacetic acid and one plate was treated every 12 or 24 hours until the cells were all overgrown. Then all 96-well plates were washed with trichloroacetic acid, dried and stained with Sulforhodamine B sodium salt (SRB) (Sigma, USA). After the SRB was washed with acetic acid and dried, 150 µL of 10 mmol/L Tris was added to the 96-well plates, and the absorbance was measured with the microplate reader (Thermo Fisher, USA) at 562 nm. The method above is based on previous report.26 (link)
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