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28 protocols using anti ifn γ antibody

1

Differentiation of Human Naive CD4+ T Cells

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Human naïve CD4+ T cells were activated and differentiated under certain conditions. Briefly, cells were cultured under the stimulation of precoated anti-CD3 antibody (2 μg/ml, Sigma-Aldrich, USA) and anti-CD28 antibody (1 μg/ml, Sigma-Aldrich) for the desired time with the intention of activation. In addition to anti-CD3 and anti-CD28 antibodies, human naïve CD4+ T cells were cultured under the following polarization conditions for cell differentiation: anti-IL-4 antibody (10 μg/ml, Peprotech, USA), IL-12 (10 ng/ml, Peprotech), IL-2 (5 ng/ml, Peprotech) for Th1 polarization; anti-IFN-γ antibody (10 μg/ml, Peprotech), IL-2 (5 ng/ml), IL-4 (25 ng/ml, Peprotech) for Th2 polarization; anti-IFN-γ antibody (10 μg/ml), anti-IL-4 antibody (10 μg/ml), IL-6 (25 ng/ml, Peprotech), TGF-β (5 ng/ml, R&D System, USA), IL-1β (12.5 ng/ml, Peprotech), IL-21 (20 ng/ml, R&D System), IL-23 (25 ng/ml, Peprotech) for Th17 polarization; IL-6 (20 ng/ml), IL-21 (20 ng/ml), IL-12 (10 ng/ml), TGF-β (5 ng/ml) for Tfh polarization, IL-2 (10 ng/ml), TGF-β (5 ng/ml) for Treg polarization.
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2

Regulatory T Cell and Th17 Analysis

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Draining lymph node cells were collected for further analysis at the end of CIA as described above. For regulatory T cell analysis, the cells were surface-stained with antibodies against CD4 and CD25, followed by intracellular staining with anti-Foxp3 antibody (eBioscience; San Diego, CA). For the Th1 and 17 cells analysis, the lymph node cells were stimulated with PMA (50 ng/ml; Sigma-Aldrich, St. Louis, MO, USA) plus ionomycin (1 μg/ml; Sigma-Aldrich, St. Louis, MO, USA) for 5 h in culture medium in the presence of GolgiStop (BD Biosciences, San Jose, CA, USA), then surface-stained with anti-CD4 antibody followed by intracellular staining with anti-IL-17 and anti-IFN-γ antibodies (eBioscience; San Diego, CA). The cells were analyzed on an LSRII flow analyzer (BD Biosciences, San Jose, CA, USA) using FlowJo (Tree Star, Ashland, OR) (Qiao et al. 2012 (link); Ying et al. 2010 (link);).
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3

Intracellular Cytokine Analysis in BALF

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Broncheoalveolar lavage was performed with five 1.0-ml aliquots of PBS through a tracheal cannula. To evaluate cytokine production, BALF cells were harvested and restimulated with 50 ng/ml PMA and 1 µg/ml ionomycin (Sigma-Aldrich) for 4 h. For intracellular staining, brefeldin A (BD-Pharmingen, San Diego, CA) was added during the final 2 h of stimulation. Cells were fixed with 4% paraformaldehyde, permeabilized with 0.5% Triton X-100, and incubated with anti-CD4, anti-γδTCR, anti-IL-17, and anti-IFN-γ antibodies (eBioscience). Intracellular cytokine levels were assayed by flow cytometry.
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4

Th2 Polarization of Mouse CD4+ T Cells

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Naive splenocytes were isolated from 6-8-wk-old C57BL/6 OX40-Cre HuRfl/fl knockout mice or C57BL/6 HuRfl/fl control mice. CD4+ T cells were isolated using CD4 (L3T4) MicroBeads (Miltenyi Biotec) following the manufacturer’s protocol. Cells were activated with anti-CD3 anti-CD28 (5 μg/ml each) for 5 days in T cell media (DMEM, 10% FCS, 50ug/ml gentamicin, 1mM Na Pyruvate, 2mM L-Glutamine and 0.05mM beta-mercaptoethanol (2-BME). For Th2 polarizing condition 100 U/ml rIL-4, 50 U/ml rIL-2, and 10 μg/ml anti–IFN-γ Ab were added in the media upon activation. Anti-CD3, anti-CD28, anti-IL-4, and anti- IFN-γ antibodies were purchased from eBioscience (San Diego, CA). Cytokines were all purchased from Peprotech (Rocky Hill, NJ). Tissue culture reagents were all purchased from Life Technologies.
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5

Th17 Cell Polarization Modulation

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Naive CD4+CD62L+ T cells (purity of cells >95%) were purified from the spleens of DBA/1 mice using a CD4+CD62L+ T Cell Isolation Kit II (Miltenyi Biotec, Bergisch Gladbach, Germany) and cultured in RPMI 1640 medium supplemented with 10% FBS, 100 IU/ml penicillin and 100 mg/ml streptomycin. To induce Th17 polarization, the purified cells were stimulated with plate-bound anti-CD3 antibodies (eBioscience, San Diego, CA, USA, 2 μg/ml), anti-CD28 antibodies (eBioscience, 2 μg/ml), TGF-β (2 ng/ml), IL-6 (20 ng/ml), anti-IFN-γ antibodies (10 μg/ml) and anti-IL-4 antibodies (10 μg/ml), with or without silibinin (0, 50, and 100 μM), for 72 h. All reagents were from PeproTech (Rocky Hill, NJ, USA). Activated cells were restimulated with PMA (20 ng/ml, Sigma-Aldrich) and ionomycin (500 ng/ml, Sigma-Aldrich) in the presence of brefeldin A (10 μg/ml) for 5 h before intracellular staining was performed. Cells were stained with phycoerythrin-conjugated anti-mouse IL-17 antibodies (BD Biosciences) and measured by flow cytometry.
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6

Induction of Regulatory T Cells

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Naive CD4+ T cells from spleen and lymph nodes were enriched by negative selection using EasySep Mouse Naive CD4+ T cell isolation kit (STEMCELL Technologies). 100,000 cells/well (50,000 CD45.1 cells and 50,000 CD45.1+ cells) were added to 96-well plates (Costar 3370, Corning) coated with anti-CD3 (1 μg/mL) and anti-CD28 (0.5 μg/mL) antibodies. In IL-2 titration experiments, the cell culture medium was supplemented with 5 ng/mL recombinant human TGF-β (Peprotech), 10 μg/mL anti-IL-4 antibodies (clone 11B11), and 10 μg/mL anti-IFN-γ antibodies (clone XMG1.2) at seeding, and recombinant IL-2 (National Cancer Institute; concentrations indicated in figures) was added three days later when cells were moved to U-bottom 96-well plates with fresh culture medium. In TGF-β titration experiments, the cell culture medium was supplemented with TGF-β (as indicated in figures) at seeding along with anti-IL-4 and anti-IFN-γ antibodies at concentrations described above, and 20 units/ml IL-2 was added three days later. Cells were incubated at 37°C with 10% CO2 and iTregs were analyzed after 5 days in culture by flow cytometry.
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7

Naive CD4 T Cell Differentiation

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Naïve CD4 T cells were electronically sorted by gating on CD44lo cells. In case of T helper cell differentiation of Il15−/− CD4 T cells, additional parameters such as CD62L+, CD25, CD1d tetramer and CD69 were used to define naïve CD4 T cells. Sorted cells were stimulated with plate-bound anti-CD3/CD28 antibodies and cultured under skewing conditions for 5 days. Th1 condition: recombinant mouse IL-12 (10 ng/ml) and anti-IL-4 antibodies (10 µg/ml, Biolegend). Th2 condition: anti-IFNγ antibodies (10 µg/ml), and recombinant mouse IL-4 (20 ng/ml, Peprotech); Th17 conditions: anti-IL-4 (10 µg/ml) and anti-IFNγ antibodies (10 µg/ml), recombinant human TGFβ (5 ng/ml, Peprotech) and recombinant mouse IL-6 (30 ng/ml, Peprotech). Where indicated, recombinant human IL-15 (25 ng/ml, Peprotech), recombinant human IL-2 (25 ng/ml, Peprotech), or recombinant mouse IL-15/IL-15Rα complex (100 ng/ml, eBioscience) was added to the cell cultures. For cytokine production analysis, cultures were stimulated for 3 hours with PMA/ionomycin (Sigma) and Brefeldin A (eBioscience) for 3 hours, followed by intracellular staining and flow cytometric analysis.
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8

LCMV-GP33 Tetramer Staining Protocol

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The Tetramer Facility of National Institutes of Health (NIH) provided LCMV-GP33 tetramer. Cells were stained with allophycocyanin (APC)-labeled GP33 MHC class I tetramer (GP33/H-2Db) for 15 minutes at 37 °C. After incubation, the samples were stained with anti-CD8 (clone 53–6.7; eBioscience) or anti-CD4 (clone GK1.5; eBioscience) antibodies for 30 minutes at 4 °C. Absolute numbers of GP33-specific CD8+ T cells were calculated with fluorescent beads (BD Biosciences) by using fluorescence-activated cell sorting (FACS). For measurement of intracellular IFN-γ, cells were fixed with 2% formaldehyde in PBS for 10 minutes, permeabilized with 1% saponin in FACS buffer at room temperature, and stained with anti–IFN-γ antibody for 30 minutes at 4 °C (clone XMG1.2; eBioscience). All stained cells were analysed with a FACSFortessa (BD Biosciences) flow cytometer, and data were analysed with FlowJo software.
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9

Tfh Cell Differentiation and Suppression by UC-MSCs

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PBMCs were isolated from peripheral blood using Ficoll density-gradient centrifugation. Naïve CD4+T cells were purified from PBMCs according to the manufacturer’s instruction (Miltenyi Biotec, Bergisch Gladbach, Germany). These purified naïve CD4+T cells (1 × 106/well) were differentiated into Tfh cells under Tfh cell-polarizing condition (3 μg/ml soluble anti-CD3/28 (eBioscience, San Diego, CA, USA), 50 ng/ml recombinant IL-6 (rIL-6, PeproTech Inc, Rocky Hill, NJ, USA), 50 ng/ml rIL-21 (Abcam, Cambridge, MA, USA), 10 μg/ml anti-IL-4 antibody (eBioscience), 10 μg/ml anti-IFNγ antibody (eBioscience) and 10 μg/ml anti-TGF-β antibody (R&D, Minneapolis, MN, USA)) for 3 days. After initial culture, these differentiating Tfh cells were washed with PBS for 2 times and further expanded alone or cocultured with UC-MSCs (1 × 105/well) in the presence of 3 μg/ml soluble anti-CD3/28 for another 2 days. To detect the factors involved in UC-MSCs-mediated suppression, UC-MSCs were collected after 2 days’ coculture with differentiating Tfh cells and then were fixed by Trizol. Furthermore, 100 μM 1-methyl-DL-tryptophan (1-MT, Sigma), the inhibitor of IDO enzyme activity or 10 μg/ml anti-IL-10 antibody (eBioscience) or 10 μg/ml anti-HLA-G antibody (Biolegend, San Diego, CA, USA) was added to the MSCs-Tfh cells coculture system to block their effects on Tfh cells.
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10

Nup98 Modulates CD4+ T Cell Activation

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After isolation, the purified CD4+ T cells from AVMC patients were transferred into 1640 medium with 10% FBS at a density of 3 × 106 cells /mL in a 12-well culture plate (Corning) and cultured at 37°C/5% CO2. They were transfected with 200 nM siRNA-Nup98 (IBS company, sense: GGAUGACCGAGAAGAAAUAGA, antisense: UAUUUCUUCUCGGUCAUCCUG) or 4 μg pcDNA3.1-Nup98 plasmid (IBS company) using the Amaxa human T-cell nucleofector kit (Lonza Cologne AG) via V24 program according to the manufacturer's instructions. 4 μg pmaxGFP® Vector was transfected into 3 × 106 CD4+ T cells by necleofection. The transfection efficiency was evaluated by flowcytometry. After transfected 12 h, green fluorescent protein (GFP) expression was checked to show the efficiency. The nonsilencing control (NC) siRNA (IBS company, sense: UUCUCCGAACGUGUCACGUTT, antisense: ACGUGACACGUUCG GAGAATT) or empty pcDNA3.1 (IBS company) was transfected into CD4+ T cells as control. Cells were then stimulated with 5 × 104 PFU/mL CVB3, 5 μg/mL of anti-CD3 (ebioscience), 2 μg/mL soluble anti-CD28 (eBioscience), 10 μg/mL anti-IL-4 antibody (ebioscience), and 10 μg/mL anti-IFN-γ antibody (ebioscience). After 72 h of incubation, cells and supernatants were collected, respectively, for further study.
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