The largest database of trusted experimental protocols

23 protocols using mocetinostat

1

Evaluation of Histone Deacetylase Inhibitors

Check if the same lab product or an alternative is used in the 5 most similar protocols
Entinostat (DC6909) was bought from DC chemicals (Shanghai, China). Vorinostat (S1047) and Mocetinostat (S1122) were from Selleck chemicals (Houston, TX, USA). The siRNAs and primers were purchased from Integrated DNA Technologies (Coralville, IA, USA) and the sequence information is shown in Supporting Information Tables S1 and S2. Primary antibodies against BRCA1 (sc-642), heme oxygenase 1 (HO-1) (sc-136960), GAPDH (sc-365062), PARP1 (sc-7150), acetyl-histone H4 (sc-8662) and histone H4 (sc-25260) were purchased from Santa Cruz Biotechnology (Dallas, TX, USA). Primary antibodies against phospho-histone H2A.X (γ-H2AX) (Ser139) (#9718S), TXNIP (#14715S) and cleaved caspase-3 (#9661S) were purchased from Cell Signaling Technology (Danvers, MA, USA). Primary antibody against MLXIP was from Proteintech (Rosemont, IL, USA). Secondary antibodies conjugated with horseradish peroxidase (HRP) were all purchased from Santa Cruz Biotechnology. The dilution factors of different antibodies can be found in Supporting Information Table S3.
+ Open protocol
+ Expand
2

Evaluating HDAC inhibitors in cancer cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
GH (testicular cancer), H1299 (adenocarcinoma of the lung), HeLa (cervical carcinoma) and U2OS (osteosarcoma) cells were maintained in Dulbecco's Modified Eagle medium supplemented with 10% FBS. Ovcar-3 (ovarian carcinoma), K562 (chronic myelogenous leukemia) and HuT-78 (cutaneous T-cell lymphoma) cells were maintained in RPMI 1640 medium with 10% FBS. The HDAC inhibitors Trichostatin A (Sigma-Aldrich), SAHA, Mocetinostat, Entinostat, PCI-34051, Droxinostat and Tubastatin A hydrochloride (all Selleckchem) were dissolved in DMSO and added as indicated. Corresponding amounts of DMSO alone were added to controls.
+ Open protocol
+ Expand
3

Epigenetic Modulator Dosage Preparation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mocetinostat was purchased from Selleckchem (Houston, TX, USA). Vorinostat was purchased from Biovision (Mountain View, CA, USA).
+ Open protocol
+ Expand
4

HDAC8 Enzyme Inhibition Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Recombinant human HDAC8 from Sf9 cells was purchased from BPS Bioscience (cat#50008). HDAC inhibitors (PCI-34051, SAHA, Panobinostat, and Mocetinostat) were purchased from Selleckchem.com (cat#S2012, S1047, S1030, S1122, respectively). Solvents for peptide synthesis were purchased from Fisher unless otherwise indicated. Wang resin, Fmoc-protected amino acids, and derivatives were purchased from Chem-Impex.
+ Open protocol
+ Expand
5

Comprehensive Chemical Reagents for Cellular Studies

Check if the same lab product or an alternative is used in the 5 most similar protocols
Resveratrol, piceatannol, resminostat, entinostat, mocetinostat, vorinostat, curcumin, garcinol, anacardic acid and Tip60i were purchased from Selleckchem (Houston, TX, USA). MB-3 and BMS-345541 were purchased from MilliporeSigma (Burlington, MA, USA). Pterostilbene and myricetin were from LKT Laboratories (St. Paul, MN, USA) and trimethoxy-Resveratrol (trans-3,5,4′-trimethoxystilbene) was from Cayman Chemical Co. (Ann Arbor, MI, USA). Stock solutions of the chemicals were prepared based on the information provided by the manufacturer and maintained at −20°C. The antibodies for human PD-L1 (E1L3N, 13684), p38 MAPK (D13E1, 8690), NF-κB p65 (D14E12, 8242), γH2AX (20E3, 9718), cleaved caspase 3 (D3E9, 9579), IRF-1 (D5E4, 8478) and rabbit IgG isotype monoclonal antibody (DA1E, 5742) conjugated to PE were obtained from Cell Signaling Technology (Beverly, MA, USA). c-Myc antibody (9E10, sc-40) was obtained from Santa Cruz Biotechnology Inc. (Santa Cruz, CA, USA). Fetal bovine serum, RPMI-1640, DMEM, streptomycin and penicillin were from Gibco/Thermo Fisher Scientific (Waltham, MA, USA). All other chemicals and solvents were of analytical grade.
+ Open protocol
+ Expand
6

Evaluating miRNA-mediated Regulation in Cancer

Check if the same lab product or an alternative is used in the 5 most similar protocols
miRNA (catalog numbers 4464058 [nonspecific] and 4464066 [miR‐193b]) and anti‐miRNA (catalog numbers 4464076 [nonspecific] and 4464084 [anti‐miR‐193b]) were purchased from Ambion (Foster City, CA, USA). SMARTpool siRNA for FOXM1 and RRM2 were purchased from Dharmacon (Lafayette, CO, USA). 5‐Aza‐dC and mocetinostat were purchased from Selleck Chemicals (Houston, TX, USA). Wild‐type and mutant FOXM1 and RRM2 3’UTR reporters were purchased from Switchgear Genomics (Carlsbad, CA, USA). The mutated oligonucleotide sequences are shown in Table S1.
+ Open protocol
+ Expand
7

Evaluating HDAC Inhibitor Efficacy

Check if the same lab product or an alternative is used in the 5 most similar protocols
Romidepsin was obtained from a US-based pharmacy as a marketed commercial formulation of the drug. Vorinostat, panobinostat, givinostat, mocetinostat and SB939 were obtained from Selleck Chemicals (Houston, TX). Phorbol 12-myristate 13-acetate (PMA) and ionomycin were obtained from Sigma Aldrich (St. Louis, MO). All compounds were dissolved in DMSO. Effects of HDAC inhibitors in all assays and models used in this study have been compared to vehicle (i.e. DMSO) treated controls.
+ Open protocol
+ Expand
8

Evaluation of HDAC Inhibitors in Vitro

Check if the same lab product or an alternative is used in the 5 most similar protocols
Panobinostat (for in vitro studies) and mocetinostat (17 (link)) were purchased from Selleck Chemicals. Gemcitabine was purchased from Accord Healthcare Ltd. TMP195 (18 (link)) was a generous gift from GlaxoSmithKline and, for in vivo experiments, Panobinostat was a generous gift from Novartis.
+ Open protocol
+ Expand
9

Cell Culture Conditions and Experimental Treatments

Check if the same lab product or an alternative is used in the 5 most similar protocols
L3.6, BxPC3 and Panc1 cells were purchased from ATCC (Manassas, VA, USA) and cultured in their respective growth media supplemented with 10% fetal bovine serum (Sigma), 1× Pen/Strep (Sigma) at 37°C under 5% CO2. L3.6 cells were grown in phenol red-free Minimum Essential Medium Eagle (MEM; Invitrogen) containing 1× l-glutamine, BxPC3 cells in phenol red-containing Roswell Park Memorial Institute (RPMI; Invitrogen) 1640 medium and Panc1 cells in phenol red-free Dulbecco's modified Eagle's medium/F-12 (DMEM/F-12; Invitrogen) growth medium. The authenticity of all cell lines used in this study was authenticated by DNA profiling using eight different and highly polymorphic short tandem repeat (STR) loci. Cells were treated with 4SC-202 (1 μM), mocetinostat (500 nM, Selleckchem), entinostat (500 nM, Selleckchem), JQ1 (250 nM) or DMSO (vehicle) for 24 or 72 h and TGFβ (5 ng/ml; R&D systems) for 72 h as indicated. siRNA transfections were performed using Lipofectamine® RNAiMAX (Invitrogen) according to the manufacturer's instructions. SmartPool® siRNA against MYC (Dharmacon) contained the following sequences: 5΄-AACGUUAGCUUCACCAACA-3΄, 5΄-GGAACUAUGACCUCGACUA-3΄, 5΄-GAACACACAACGUCUUGGA-3΄, 5΄-CUACCAGGCUGCGCGCAAA-3΄. siGENOME non-targeting siRNA (Dharmacon; D-001206-13) was used as a negative control.
+ Open protocol
+ Expand
10

Cryoinjured Zebrafish Hearts Treated with HDAC1 Inhibitor

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cryoinjury of adult zebrafish hearts were performed as described before [18 (link)]. Cryoinjured fish were incubated in fish water containing the HDAC1 inhibitor Mocetinostat (Selleckchem #S1122, 5 μM) from 1–30 dpi (days post injury) in an incubator set at 27°C. DMSO treatment served as control. Solutions were changed every day. The dissection and IF of embryonic hearts at 72 hpf were carried out as described elsewhere [16 (link)].
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!