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13 protocols using p pi3k

1

Western Blot Analysis of SMMC-7721 Cell Signaling

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SMMC-7721 cells were pretreated with LFE (0.5 mg/ml) for 36 h. Total protein was extracted and detected with BCA Protein Concentration Determination Kit (Meilun Biotechnology Co., Ltd.). Protein samples were separated by 8%–15% SDS-PAGE (80 V, for 30 min, and then 120 V, for 40 min) and transferred to the PVDF membrane in the transfer buffer at 120 V for 1–3 h. The membranes were blocked with 5% skim milk for 2 h at room temperature and also nurtured overnight at 4°C with primary antibodies against β-actin, PTEN, PI3K, p-PI3K, Akt, p-Akt, VEGFA and Caspase 9 (Proteintech, United States). After being rinsed three times with TBST, membranes were incubated 2 h at room temperature in secondary antibodies and subsequently be visualized with EasySee Western Blot Kit (Beijing Quanshi Gold Biotechnology Co., Ltd., Beijing, China). Finally, the images were quantified using ImageJ software and standardized against β-actin. In addition, three independent assays were performed.
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2

Western Blot Analysis of Signaling Pathways

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After different doses (described above) of drug treatment for 48 h, cells (HT29, SW837, LS180, SW480 and HCT116) were lysed in RIPA lysis and extraction buffer (Cat# 89,900, Thermo, USA). BCA protein assay kits (Beyotime, China) were used for collection and quantification of proteins. Electrophoresed by 10% SDS‒PAGE, proteins were moved to a PVDF membrane (Bio-Rad, USA) with transfer buffer. The 1-hour blocking of membranes was made with 5% nonfat milk powder, followed by incubation with primary antibodies (1:1000) against β-actin (Cell Signaling Technology (CST), #3700), PI3K (Proteintech, 60225-1-Ig), P-PI3K (CST, #17,366), ERK1/2 (Proteintech, 67170-1-Ig); P-P44/42MAPK (ERK1/2) (CST, #4370), AKT (CST, #4691), P-AKT (CST, #4060), MEK1/2 (Proteintech, 110499-1-AP), and P-MEK1/2 (CST, 9154) overnight at 4 °C. The next day, the 1-hour incubation of membranes was made with the appropriate secondary antibodies (goat anti-rabbit IgG/HRP (1:10000, ZSGB-BIO, ZB-2301) or goat anti-mouse IgG/HRP (1:10000, ZSGB-BIO, ZB-5305)) at room temperature. A western blotting detection system (Bio-Rad, USA) was adopted to visualize protein bands.
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3

Protein Expression Analysis by Western Blot

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The 30-µg protein extracts were mixed with a sample buffer, boiled for 10 min, and followed by electrophoresis using 8–15% sodium dodecyl sulfate-polyacrylamide gels. We transferred the proteins in the gels to a polyvinylidene difluoride membrane and incubated the blots with primary antibodies against, α-SMA (abcam, JHY, Cambridge, UK), DNMT1 (Santa Cruz, CA, USA), DNMT3a (Santa Cruz, CA, USA), DNMT3b (Santa Cruz, CA, USA), p-PI3K (PROTEINTECH, Rosemont, IL, USA), p-SMAD3 (abcam, JHY, Cambridge, UK), LC3B II (Cell signaling, Danvers, MA, USA), and GAPDH (PROTEINTECH, IL, USA) for protein control. After washing the blots with tris-buffered saline and incubating them with horseradish peroxidase-coupled anti-rabbit immunoglobulin-G antibodies (dilution, 1:5000), HRP anti-mouse immunoglobulin-G antibodies (dilution, 1:10,000), and HRP anti-goat immunoglobulin-G antibodies (dilution, 1:10,000) at room temperature for 1 h, we developed them with enhanced chemiluminescence detection (GE Healthcare Biosciences AB, Uppsala, Sweden), exposed them to film, and quantified the signals using densitometry.
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4

Western Blot Analysis of Cell Signaling

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Prechilled RIPA buffer containing phosphatase inhibitors and protease inhibitors was used to lyse Cells and tissues. The protein lysates were separated by SDS-PAGE and transferred to PVDF membranes (Millipore, Darmstadt, Germany). The membranes were blocked in 5% skimmed milk in 1x TBS-T (0.5% Tween-20) and incubated overnight at 4°C with the following primary antibodies: HRK (1:500; immunoway), CCND1, CDK4, CDK6, p21, BAX, Bcl-2, cleaved caspase-3, caspase-3, AKT, p-AKT(Ser473), p-PI3K(Tyr458), PARP1, cleaved-PARP1, GAPDH (1:1000; Proteintech), mTOR, p-mTOR(Ser2448), PI3K (1:1000; ZEN BIO). P70S6K, p-P70S6K(1-T389) (1:1000; Abclonal). After incubated with HRP-conjugated secondary antibodies for 1 h at room temperature, the membranes were visualized with ECL Western Blotting Substrate (FDbio). Immunoblotting signals were detected by densitometry using Image J software.
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5

Western Blot Analysis of Inflammatory and Signaling Proteins

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After drug treatment, cell/small intestine tissue was harvested and lysed with 1 × RIPA lysis buffer (Beyotime, Shanghai, China) containing phenyl-methyl-sulfonyl fluoride (PMSF, Beyotime, Shanghai, China). The proteins were obtained from cell lysates and separated on SDS-PAGE. After transferring proteins to PVDF membranes (Milipore, Darmstadt, Germany), the membranes were blocked with TBST supplemented with 5% skimmed milk (Biofroxx, Guangzhou, China) for 1 h at room temperature. The membranes were then incubated with the primary antibodies (TNFα, IL-1β, CRHR1, CRHR2, GAPDH, p-PI3K, PI3K, p-AKT, AKT, p-mTOR, mTOR, and ZO-1; 1:1000 dilution, Proteintech, Wuhan, Chian) at 4 °C overnight, followed by an incubation with HRP-conjugated secondary antibody (Proteintech, Wuhan, China) for 1 h at room temperature. Signals were detected using the ECL Western blotting substrate (Millipore, Darmstadt, Germany) and quantified with imageJ software (ImageJ 1.46r, National Institutes of Health, Bethesda, MD, USA). The data were obtained from three independent experiments.
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6

Western Blot Analysis of Signaling Pathways

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HCASMC cells were distributed in six-well plates at 5 × 105/dish, and the corresponding treatment was carried out for 24 h. Then, cell lysis was conducted with RIPA lysis kit (Beyotime) including phenylmethanesulfonyl fluoride. Quantification of total protein was detected with BCA protein assay kit (Beyotime). Total proteins (20 μg) were separated using 7.5–10% sodium dodecyl sulfate polyacrylamide gel electrophoresis. The resolved protein was subsequently transferred onto a nitrocellulose membrane. Membranes were blocked with quick blocking buffer (Beyotime) for 10 min at room temperature, and then incubated with primary antibodies at 4°C for 15 h, including p-STAT3, p-MAPK14, p-AKT (1:1,000; Cell Signaling Technology, Danvers, MA, USA), p-PI3K, PI3K, AKT, mTOR, and p-mTOR (1:1,000; Proteintech Group, Wuhan, China). Membranes were washed and then incubated in secondary antibodies (1:10,000) at room temperature for 1 h. Proteins were imaged by the Bio-Rad Chemi Doc XRS imaging system (Bio-Rad, USA).
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7

Molecular Signaling Pathway Profiling

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Abcam (Cambridge, MA, United States) provided the COL1A1, RUNX2, OCN, PI3K, p-PI3K, and GAPDH; and ProteinTech (Wuhan, China) provided the primary antibodies against Nrf2, NQO1, GCLc, and Gclm. The antibodies were purchased from Cell Signaling Technologies (Danvers, MA, United States) and were directed against P-Akt, Akt, TrxR1, Keap1, and HO-1. Fetal bovine serum (FBS), Dulbecco's Modified Eagle Medium (DMEM), and penicillin/streptomycin were purchased from Gibco BRL (Thermo Fisher Scientific, Waltham, MA, United States). The criteria for tissue and cell culture were followed by all other substances, which were all of analytical quality.
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8

Western Blotting Procedure for Protein Detection

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Western blotting was performed according to standard protocols. Cell lysate was prepared in RIPA lysis buffer (Beyotime, Haimen, China), separated through electrophoresis and then transferred onto polyvinylidene difluoride (PVDF) membrane (Solarbio). The membrane was blocked with 5% nonfat milk in Tris-buffered saline containing 0.1% Tween-20 for 60 minutes at 37 °C. Following that, membranes were incubated with the primary antibody to E-cadherin (CST; 1:1,000), vimentin (CST; 1:1,000), Snail (CST; 1:1,000), PI3K (Proteintech, Chicago, IN, USA; 1:1,000), pPI3K (CST; 1:1,000), AKT (Proteintech; 1:1,000), pAKT (Proteintech; 1:1,000), and γ-H2AX (Upstate, Billerica, MA, USA; 1:1,000) overnight at 4 °C. Next, the membranes were then incubated with the appropriate secondary antibodies conjugated to horseradish peroxidase (Proteintech, 1:10,000) at 37 °C for 1 hour. The signals from the immunoreactive bands were visualized with enhanced chemiluminescence (ECL) substrate (Millipore, Billerica, MA, USA). Glyceraldehyde 3-phosphate dehydrogenase (GAPDH, Proteintech, 1:1,000) served as the internal control for normalization. The band densities were quantified using ImageJ software (version 1.62; National Institutes of Health, Bethesda, MD, USA). The antibodies used are described in Table S1.
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9

Evaluation of Protein Expression in Cells

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The tissues that has been ground down or cells were treated with ristocetin-induced platelet aggregation buffer (Shandong Sparkjade Scientific Instruments Co., Ltd., Jinan, China) for total protein extraction. The BCA kit (Solarbio, Beijing, China) was then used for quantification. Subsequently, the protein samples (30–50 μg) were separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto polyvinylidene fluoride (PVDF)membranes (Millipore). After blocking the PVDF membranes with 5% skim milk for two hours, they were rinsed twice using TBST (tris buffered saline + 0.5% [v/v] Tween-20) buffer. Subsequently, the membranes were incubated overnight at 4 °C after the addition of primary antibodies, including RRS1 (1:2000; Abcam; cat. No. ab188161), GRP78 (1:5000; Proteintech; cat. No. ab32072), GAPDH (1:2000; Abclonal; cat. No. AC002), phosphorylated (p)-AKT (1:1000; Abmart; cat. No. T40067), p-PI3K (1:1000; Proteintech; cat. No. AP0427), PI3K (1:1000; Abclonal; cat. No. A4992), AKT (1:1000; Abmart; cat. No. T55561), and ubiquitin (1:1000; Proteintech; cat. No. 10201-2-AP). After incubation with specific secondary antibodies (1:5000; Abclonal; cat. No. AS014 and AS003) for one hour at room temperature, the visualization of PVDF membranes were conducted based on electrochemiluminescence (ECL) (Abclonal, Wuhan, China).
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10

Immunofluorescence Analysis of Activated Signaling Pathways

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Cultivate cells in a 24-well plate and fix with 4% paraformaldehyde for 15 min. Wash three times and permeabilize for 10 min in PBS containing 0.2% Triton X-100. Incubate overnight at 4 °C with mouse anti-human antibodies p-AKT and p-PI3K (Proteintech, China). The next day, wash with PBS and incubate for 2 h with goat anti-mouse IgG secondary antibody labeled with Alexa Fluor 488. After washing with PBS, incubate the cell samples with DAPI for 5 min and capture fluorescence images using a fluorescence microscope.
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